These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1084 fasta sequence [GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGCTTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTGGTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTT-CTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATCTACA-TGTTTTTGTTACGAA-CGTTCTGTTTTAATTGTATAGTAACATT-NTT-TTTCATGGTGAATTGATAATGG-TTATTTGATAATTTATTTTATTACATCAAATAAATTATTATAAT] [+] EMBL CD081812 [GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGCTTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTGGTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTNCTTTTACCG TTTGAATGTANGATTCTATTNTGTG AATATACATCATTCATCTTATGATTTTATATACGCACACACACCAATCCATACCAATGATTATACATCCATCTACANTG TTTTGTTACGAACCGTTCTG TCTAA TGTATAGT ACATT NGT TTTCATGGNGAA TGAT ATGGNNTA TTGATAA TTA TTTATTAC TC AATAAATat ] [-] EMBL CD160199 [ AAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCGAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATT ] [-] EMBL CD075543 [ CTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTTTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTTTTCATGATTTATTCCGAAATACCTTGTATCACCTT TTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATTTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATTTACA TGTTTTTGTTACGAA CGTTTTGTTTTAATTGTATAGTAACATTGTTT TTTCATGGTGAATTGATAATGG TTATTTGATAATTTATTTTATTACATCAAATAAGTTATT ] [-] EMBL CD073617 [ ATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTT CTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATCTACA TGTTTTTGTTACGAA CGTTCTGTTTTAATTGTATAGTAACATT GTTCTTTCATGGTGAATTGATAATGG TTATTTGATAATTTATTTTATTACATCAAATAAATTATTATAAT] consensusID : consensus_8389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 904 fasta sequence [CTCGCAGGCCAAAATTCGGCACGAGGGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAACAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCTCATGATCTATTNCGAAATACCTGNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAATTACATCATTCATCTTATGATTTTATATACCCCACACCCAATCCTACAAGGATTATACCTCATTTACCTGTTTTGTTACAACAGTTTGTCTAATGGATAAAAACATTGTTTTTTTTGGGAAATGAAAAGGGTTTTGGAAATTTTTTTTTTCCTCAAAAATTTT] [+] EMBL CD080122 [CTCGCAGGCCAAAATTCGGCACGAGGGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAACAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCTCATGATCTATTNCGAAATACCTGNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAATTACATCATTCATCTTATGATTTTATATACCCCACACCCAATCCTACAAGGATTATACCTCATTTACCTGTTTTGTTACAACAGTTTGTCTAATGGATAAAAACATTGTTTTTTTTGGGAAATGAAAAGGGTTTTGGAAATTTTTTTTTTCCTCAAAAATTTT] consensusID : consensus_8389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [GAGGCCAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATATACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATACATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTATTGTATAGAANCATTGTTCTTTCATGGNGAATTGATATGGGTATTTGATANTTATTTTATACATCAATAAATTTTATA] [+] EMBL CD079340 [GAGGCCAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATATACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATACATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTATTGTATAGAANCATTGTTCTTTCATGGNGAATTGATATGGGTATTTGATANTTATTTTATACATCAATAAATTTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8389#0 GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGC 60 consensus_8389#2 ------------------------------------------------------------ consensus_8389#1 ------------------------------------------------------------ consensus_8389#0 TTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTG 120 consensus_8389#2 ------------------------------------------------------------ consensus_8389#1 ------------------------------------------------------------ consensus_8389#0 GTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCT 180 consensus_8389#2 ------------------------------------------------------------ consensus_8389#1 -----------------------------------CTCGCAGGCCAAAATTCGGCACGAG 25 consensus_8389#0 GGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAA 240 consensus_8389#2 -------------------------------------------------------GAGGC 5 consensus_8389#1 GGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAA 85 * consensus_8389#0 AGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 300 consensus_8389#2 CAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 65 consensus_8389#1 AGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 145 **** * ****************************************** consensus_8389#0 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 360 consensus_8389#2 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 125 consensus_8389#1 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 205 ************************************************************ consensus_8389#0 GTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTC 420 consensus_8389#2 GTATCGTTCACGCCTTTATGTATACTTACTATGGTT-GGCCTCAGCTGGACCTCGTTTTC 184 consensus_8389#1 GTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTC 265 ************************************ *********************** consensus_8389#0 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 480 consensus_8389#2 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 244 consensus_8389#1 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 325 ************************************************************ consensus_8389#0 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 540 consensus_8389#2 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 304 consensus_8389#1 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 385 ************************************************************ consensus_8389#0 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 600 consensus_8389#2 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 364 consensus_8389#1 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 445 ************************************************************ consensus_8389#0 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 660 consensus_8389#2 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 424 consensus_8389#1 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 505 ************************************************************ consensus_8389#0 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAAC 720 consensus_8389#2 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAAC 484 consensus_8389#1 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAAC 565 ********************************************* ************** consensus_8389#0 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCAC 780 consensus_8389#2 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCAC 544 consensus_8389#1 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAA 625 ****************************************** *********** **** consensus_8389#0 CAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCC 840 consensus_8389#2 CAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCC 604 consensus_8389#1 CAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCT-CATGATCTATTNC 684 ** ******************* * ******************* *********** * consensus_8389#0 GAAATACCTTGTATCACCTTCTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATA 900 consensus_8389#2 GAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATA 664 consensus_8389#1 GAAATACCT-GNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAAT- 742 ********* * ******************* ************* **** **** *** consensus_8389#0 TACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATA 960 consensus_8389#2 TACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATA 724 consensus_8389#1 TACATCATTCATCTTATGATTTTATATAC-CCCACAC-CCAATCC-TACAAG-GATTATA 798 ********************* ******* * ***** ***** ***** ******* consensus_8389#0 CATCCATCTACATGTTTTTGTTACGAACGTTCTGTTTTAATTGTATAGTAACATTNTT-T 1019 consensus_8389#2 CATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTA-TTGTATAGAANCATTGTTCT 783 consensus_8389#1 CCTC-ATTTACCTGTTTT-GTTAC-AACAGTTTGTCTAA--TGGATAAAAACATTGTT-T 852 * ** ** *** ****** ***** ** * ** * ** *** * **** ** * consensus_8389#0 TTCATGGTGAATTGATAATGGTTATTTGATAATTTATTTTATTACATCAAATAAATTATT 1079 consensus_8389#2 TTCATGGNGAATTGATA-TGGGTATTTGATANTT-ATTTTAT-ACATCAA-TAAATT-TT 838 consensus_8389#1 TTTTTGGGAAATGAAAA--GGGT-TTTGGAAATT--TTTTTTTTCCTCAA--AAATTTT- 904 ** *** *** * * ** * **** * ** **** * * **** ***** * consensus_8389#0 ATAAT 1084 consensus_8389#2 ATA-- 841 consensus_8389#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||