These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1225 fasta sequence [CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGTACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAATCTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGCGAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACTGCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATGTTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTTCACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGATTTACTGCAGGAAAGTTGAATGATCT] [+] EMBL CD114203 [CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGTACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAATCTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGCGAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACTGCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGTCAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCGTATCGGGTAGACGAGGTGGATCCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGA ] [-] EMBL CD114105 [ TTCGTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGATTAGACGACTGCTCGTAAGACTGGGAAAGGGAATCATCCGGAAATTGTCAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTCCTTTCCGTTTCATATGAATTATCCATTCTAGATAGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATATAGGAGGCAGTTTGACAACTAATGTATGTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAAATCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAGCAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAG ] [+] EMBL CD149147 [ anTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTT ] [+] EMBL CD184957 [ CGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTG ] [+] EMBL CD146774 [ GAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACCTGGCGAACGAGATCGTGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTATTGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATGTTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTTCACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGATTTACTGCAGGAAAGTTGAATGATCT] consensusID : consensus_8393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [TTCGCAATGGTTGAGGCATCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC] [-] EMBL CD114297 [TTCGCAATGGTTGAGGCATCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8393#0 CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGT 60 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 ACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAAT 120 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 CTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGC 180 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 GAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACT 240 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 GCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCAC 300 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCT 360 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAAC 420 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATC 480 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCA 540 consensus_8393#1 -----------------------------------TTCGCAATGGTTGAGGCATCGTGCA 25 **** * ********** ******* consensus_8393#0 ATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCG 600 consensus_8393#1 ATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCG 85 ***************************************************** ****** consensus_8393#0 TATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTC 660 consensus_8393#1 TATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTC 145 ************************************************************ consensus_8393#0 CATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGAT 720 consensus_8393#1 CATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC 205 *** ************************************ * * * *** consensus_8393#0 CGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAG 780 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 CATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTT 840 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 GTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTT 900 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 GTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATG 960 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 AACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGT 1020 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 CTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATG 1080 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTT 1140 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 CACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGAT 1200 consensus_8393#1 ------------------------------------------------------------ consensus_8393#0 TTACTGCAGGAAAGTTGAATGATCT 1225 consensus_8393#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||