These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 804 fasta sequence [AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGGTTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCCATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAATCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAATTTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTTCAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGCGCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGCCTCCAGTCGCTTTGGCACTCCAGA] [-] EMBL CD188942 [AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCTAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTT ] [+] EMBL CD189338 [AGCGGTATATATAAAAAGGTGGTTTGTGGACTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTTTTTAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGCTTACTCAGGGCTACAAGGAATTTGGGGT ] [-] EMBL CD187150 [ CTGC ACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGGTTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAA ] [-] EMBL CD189250 [ TTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTT ] [+] EMBL CD068405 [ GTTGTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCCATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAATCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAATTTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTTCAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGCGCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGCCTCCAGTCGCTTTGGCACTCCAGA] consensusID : consensus_8406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [TGTGGATATTTAAGTTGGTATCTCTATTAATAAACATTTACAAAATATGAACAACCTCAGGGGGATTGTACAATAATTGGTCATAAATGATATTCCCCCCAAAGCATTTAACATATGGAGCCCATG] [+] EMBL CD181969 [TGTGGATATTTAAGTTGGTATCTCTATTAATAAACATTTACAAAATATGAACAACCTCAGGGGGATTGTACAATAATTGGTCATAAATGATATTCCCCCCAAAGCATTTAACATATGGAGCCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8406#0 AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACC 60 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 GGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTG 120 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 GTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAA 180 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 GTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGT 240 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 TCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAAT 300 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 GTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGG 360 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 TTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCT 420 consensus_8406#1 --TGTGGATATTTAAGTTGGTATCTCTAT-TAATAAACATTTACAAAATATGAACAACCT 57 * *** ** **** * * ** * *** ** ** ** ** * ** consensus_8406#0 TTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCC 480 consensus_8406#1 CAGGGGGATTGTACAATAATTGGTCAT---AAATGATATTCCCCCCAAAGCATTTAACAT 114 * ** ** * * ***** * *** * ** * * *** * consensus_8406#0 ATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAA 540 consensus_8406#1 ATGGAGCCCATG------------------------------------------------ 126 **** **** consensus_8406#0 TCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAAT 600 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 TTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTT 660 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 CAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGC 720 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 GCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGC 780 consensus_8406#1 ------------------------------------------------------------ consensus_8406#0 CTCCAGTCGCTTTGGCACTCCAGA 804 consensus_8406#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||