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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 659 fasta sequence
[ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTAGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA-TAAAGCTC-TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC]
[+] EMBL CD090496 [ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTAGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAAAAAAAAGACAGCTTATGTTCAGGCCATACTTGGGACATGATCTAAGTTCAGTGAAGCGGCTTTTACGCAAGGATTAAAGCTCTTTGAA AAAAATGGTAAATGCATTGAGCTGGTTT ]
[+] EMBL CD170912 [ GATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTCGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA TAAAGCTC TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCACTTATGGG ]
[+] EMBL CD119629 [ GTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA TAAAGCTC TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTATAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAA ]
[-] EMBL CD189143 [ AAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCNAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC]
[-] EMBL CD187537 [ GCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGATTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGA ]
consensusID : consensus_8417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[CATTGGCCGTTTCTGAGTTGGATAACGGAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCAGACAGTGATGCCACAGCTATAGCACATCGTTTAGA]
[+] EMBL CD180184 [CATTGGCCGTTTCTGAGTTGGATAACGGAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCAGACAGTGATGCCACAGCTATAGCACATCGTTTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8417#0 ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAA 60
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTT 120
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATC 180
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 AAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGT 240
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 CGGCTTTTACGCAAGCATAAAGCTCTTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTA 300
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 GAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAA 360
consensus_8417#1 ------------------------------------------------------------
consensus_8417#0 ATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACG 420
consensus_8417#1 -------------------------------CATTGG--CCGTTTCTGAGTTGGATAACG 27
** ** * ** * *******
consensus_8417#0 GAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGAT 480
consensus_8417#1 GAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGAT 87
************** ** ******************************************
consensus_8417#0 GATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTT 540
consensus_8417#1 GATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTT 147
****** *********************************************** *****
consensus_8417#0 AAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAA 600
consensus_8417#1 AAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAA 207
************************************************************
consensus_8417#0 AACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC- 659
consensus_8417#1 AACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCA 267
***********************************************************
consensus_8417#0 -----------------------------------
consensus_8417#1 GACAGTGATGCCACAGCTATAGCACATCGTTTAGA 302
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||