These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 296 fasta sequence [TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCCATTACA] [+] EMBL BG930169 [TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCCATTACA] [-] EMBL BG930587 [ TCGTGGGTAACTGAAGTGTGTCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTCCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTGCCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGGCTTCTTATTAGCCTTC GCTTAAGCTGAc ] consensusID : consensus_8426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 279 fasta sequence [GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCGCTTAAGTTGA] [+] EMBL BG930890 [GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCGCTTAAGTTGA] [+] EMBL BG931355 [tTCGTGGGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGATTCCTTATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCGACCCGCCATCGATCACaa ] [+] EMBL BG931381 [ gTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGGCTTCTTATAAGTCTGC ] consensusID : consensus_8426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTCCGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAGTTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTACTGATCAAGTAGGCTTCTTGTTAGTCAGCGGTTAAACTGAA] [-] EMBL BG930956 [TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTCCGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAGTTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTACTGATCAAGTAGGCTTCTTGTTAGTCAGCGGTTAAACTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8426#0 ----------TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAA 50 consensus_8426#1 ----------GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAA 50 consensus_8426#2 TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAA 60 ***** **** ******** ***************************** consensus_8426#0 GTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTC 110 consensus_8426#1 GTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATC 110 consensus_8426#2 GTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTC 120 ********** ********** ******************** *** * ******** ** consensus_8426#0 TGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAG 170 consensus_8426#1 TGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAG 170 consensus_8426#2 CGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAG 180 ***** ***** ** * * * *********** ******* ***** ******** ** consensus_8426#0 CTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCA 230 consensus_8426#1 CTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCA 230 consensus_8426#2 TTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTAC------ 234 ** ** ************ ******* ************************** consensus_8426#0 CTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCC 290 consensus_8426#1 CTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCG-CTTAAGTTGA---------- 279 consensus_8426#2 ----------TGATCAAGTAGGCTTCTTGTTAGTCAGCG-GTTAAACTGAA--------- 274 * ** *** ****** ** * ** **** *** consensus_8426#0 ATTACA 296 consensus_8426#1 ------ consensus_8426#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||