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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1308 fasta sequence
[CTCAGTCCTTCATCATACCGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATCGTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCATCAGAGGCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAAGATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGTTCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGATCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGACTGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACTTATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGTTCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT]
[+] EMBL CD149919 [CTCAGTCCTTCATCATACCGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATCGTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGT ]
[+] EMBL CD197679 [ ATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCT ]
[-] EMBL CD153880 [ TGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTGNCAAAGCAGCTAATTTGTATTCTTTATGACGGTTNTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCATCAGAGGCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAAGATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACT ]
[-] EMBL CD153282 [ TAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTG ]
[+] EMBL CD151662 [ TCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGTTCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGATCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGACTGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACTTATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGTTCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT]
consensusID : consensus_8436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[TACTCGTGCACAAGACGAATGGAATGAAGATGATGGACATGAGGCTATCAGACGCCGGCGTCTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGTGGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTAGACGACGAATATGATGCTGAAGCAGCTGAACTACATGAAATTGGACAAGATCGTGATAAAGATGATGGCGATGATGAACAACAAGATGATAATGGTAATAAATGGCCTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGATCTGAACATAAAACAACTACTTCAAAAGATACAAATTCCGATGAATTTATCCAATGGACTGGTGACCCTGAATTAAATCAATCAGATGTAGATGATGAACGGGAATTAATCCAAGAAAATATAGAAGCTGGCAAAGAAACATTCGATCCAGAAACAGACTTACCTCCGNCGCCATCGAA]
[+] EMBL CD148666 [TACTCGTGCACAAGACGAATGGAATGAAGATGATGGACATGAGGCTATCAGACGCCGGCGTCTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGTGGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTAGACGACGAATATGATGCTGAAGCAGCTGAACTACATGAAATTGGACAAGATCGTGATAAAGATGATGGCGATGATGAACAACAAGATGATAATGGTAATAAATGGCCTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGATCTGAACATAAAACAACTACTTCAAAAGATACAAATTCCGATGAATTTATCCAATGGACTGGTGACCCTGAATTAAATCAATCAGATGTAGATGATGAACGGGAATTAATCCAAGAAAATATAGAAGCTGGCAAAGAAACATTCGATCCAGAAACAGACTTACCTCCGNCGCCATCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8436#0 CTCAGTCCTTCATCATAC-CGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATC 59
consensus_8436#1 ---------------TACTCGTGC-ACAAGACGAATGGAATGAAGATGAT---GGACATG 41
*** ***** * * **** ** ** ** * * * * ***
consensus_8436#0 GTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGT 119
consensus_8436#1 A--GGCTATCAGACGCCGGCGT--CTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGT 97
** *** * ** ** * * ******** ***
consensus_8436#0 GCAAACAATAGACGTTTTCATAAT--ATCTGGTACAGTCGATTTTACAGGCTGAGA---- 173
consensus_8436#1 GGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTA 157
* * **** *** * * *** * *** * * ** ** * * ***
consensus_8436#0 AATCACATTTTTATTGTTTAGATCCCCTTCATTAGA-GAATTCATACTTCGATGGCGGCG 232
consensus_8436#1 GACGACGAATATGATGCTGAAG-CAGCTGAACTACATGAAATTGGACAA-GATCGTGATA 215
* ** * * ** * * * ** * ** * *** * ** *** * *
consensus_8436#0 GAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTT 292
consensus_8436#1 AAGATGATGGCGATGATGAACAACAAGA-----TGATAATGGTAATA-----AATGGC-- 263
** * * * * ** * * * ** * *** ** **
consensus_8436#0 CTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCAC 352
consensus_8436#1 CTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGAT 323
** ** * ** * * ** * *** * * * * * *** ** *
consensus_8436#0 GAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAG 412
consensus_8436#1 CTGAACATAAAACAACTACTTCAAAAGATACAAA------TTCCGATGAATTTATCCAAT 377
* *** ** *** ** * * * ** * ** *** ** * *
consensus_8436#0 AATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCAT 472
consensus_8436#1 GGACTGGTGACCCTGAATTAAATCAATCAGATGTAGAT-GATGAACGGGAATTAATCCAA 436
* * * ** *** * **** ** ** * ** *** * * * **
consensus_8436#0 CAGAG-GCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAA 531
consensus_8436#1 GAAAATATAGAAGCTGGCAAAGAAACATTCGA------TCCAGAAACAGACTTACCTCC- 489
* * ** * **** * ** *** ** ** ** *
consensus_8436#0 GATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGA 591
consensus_8436#1 GNCGCCATCGAA------------------------------------------------ 501
* *** * * *
consensus_8436#0 TCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGAT 651
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 ACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCT 711
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTC 771
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 ATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAA 831
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 GTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCC 891
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 ATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCA 951
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 GCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGT 1011
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGA 1071
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGAC 1131
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACT 1191
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGT 1251
consensus_8436#1 ------------------------------------------------------------
consensus_8436#0 TCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT 1308
consensus_8436#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||