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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1000 fasta sequence
[CCAAATTAAATACCATAAAACACAATAATATAGAGCCAGCGGATAGAAAAAATATGCACATATCCCACATATAGATAGATATCCAGTAGAGTGCTAATTTTATTCCAGACACAAATTGCAAATGTTTCGCCTTAGTTACAGTTTCATAGACTGGAAAGAAACCAAAACAAGAGGCCAAATAGGACGCGGCAAATAAGATATTCGACGCTAATGGAAAGCCTGCTACTACAACGCGCATAAGACCTTCGATTTCATCAATCTGTTTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGACTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAAAATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAGTAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCGATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGATCCTGGTTAACAGATGAATAGAAGTGACTAAAATTTTAACTGAGGAATCTGTTTGTATTCATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCGCATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTCAGCCTCATTGCTAAACGTAAGTAACAAATCTTTGCCATAAGGCTTTAGTGACAAGTCCAAACGTGGATCCGGTGAATTATTTTTATTTAGTAAATGATGAAATATGAATAAAGCGATCAAGGTGAACGCAATGGGTACAATAATTTGACTGAAAACAAATATTAAATTACGTTTTGTGAATATGTAACGCTTGGTCATTAAAGCATAAAATTGTTGGCGGTAGAACAAAAAGCCCTGATTGCGTAGTTGTTTATGATCAACTTTAG]
[+] EMBL CD196571 [CCAAATTAAATACCATAAAACACAATAATATAGAGCCAGCGGATAGAAAAAATATGCACATATCCCACATATAGATAGATATCCAGTAGAGTGCTAATTTTATTCCAGACACAAATTGCAAATGTTTCGCCTTAGTTACAGTTTCATAGACTGGAAAGAAACCAAAACAAGAGGCCAAATAGGACGCGGCAAATAAGATATTCGACGCTAATGGAAAGCCTGCTACTACAACGCGCATAAGACCTTCGATTTCATCAATCTGTTTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGACTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAAAATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAGT ]
[-] EMBL CD195700 [ ttCCATAAAACACAATAATATAGAGCCAACGGATAGAAAAAATATGCACATATCCCACATATAGATAGATATCCAGTAGAGTGCTAATTTTACTCCAGACACAAATTGCAAATGTTTCGCCTTAGTTACAGTTTCATAGGCTGGAAAGAAACCAAAACAAGAGGCCAAATAGGACGCGGCAAATAAGATATTCGACGCTAATGGAAAGCCTGCTACTACAACGCGCATAAGACCTTCGATTTCATCAAT ]
[+] EMBL CD117737 [ TGTGGCGGACTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAAAATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAGTAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCGATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGATCCTGGTTAACAGATGAATAGAAGTGACTAAAATTTTAACTGAGGAATCTGTTTGTATTCATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCGCATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTCAGCCTCATTGCTAAACGTAAGTAACAAATCTTT ]
[+] EMBL CD158260 [ GGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCGCATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTCAGCCTCATTGCTAAACGTAAGTAACAAATCTTTGCCATAAGGCTTTAGTGACAAGTCCAAACGTGGATCCGGTGAATTATTTTTATTTAGTAAATGATGAAATATGAATAAAGCGATCAAGGTGAACGCAATGGGTACAATAATTTGACTGAAAACAAATATTAAATTACGTTTTGTGAATATGTAACGCTTGGTCATTAAAGCATAAAATTGTTGGCGGTAGAACAAAAAGCCCTGATTGCGTAGTTGTTTATGATCAACTTTAG]
consensusID : consensus_8441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 775 fasta sequence
[GTCGAGCCACCAAATATGTTTGCGGTAATACAGCCCACATGAACAATCCAAATAGTATAACTAAATTGTGAAACTTCTCACCAAGAGCAAACTGTTCCAAATTAAATACCATAAAACACAATAATATAGAGCCACCGGATAGAAAAAATATGCACATATCCCCCATATAAATAAATATCCAGTAGAGTGTTATTTTTATTCCAGCCCCAAATTGCAAATGTTTGCCTTAAGTTCCGGTTTAATAGCTGGAAAAGAACCCAAACCAAAGGCCCAATTAGACCCGGCCAAATAAAATATTCGCCGCTAATGAAAAGCTTGTTACTCCAACGCGCATAAGACTTTCGATTTCATCAATCTGTTTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGACTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAAAATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAGTAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCGATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGATCTTCATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCGCATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTC]
[-] EMBL CD167129 [GTCGAGCCACCAAATATGTTTGCGGTAATACAGCCCACATGAACAATCCAAATAGTATAACTAAATTGTGAAACTTCTCACCAAGAGCAAACTGTTCCAAATTAAATACCATAAAACACAATAATATAGAGCCACCGGATAGAAAAAATATGCACATATCCCCCATATAAATAAATATCCAGTAGAGTGTTATTTTTATTCCAGCCCCAAATTGCAAATGTTTGCCTTAAGTTCCGGTTTAATAGCTGGAAAAGAACCCAAACCAAAGGCCCAATTAGACCCGGCCAAATAAAATATTCGCCGCTAATGAAAAGCTTGTTACTCCAACGCGCATAAGACTTTCGATTTCATCAATCTGTTTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGACTGTTGTTAGTAG ]
[+] EMBL CD170583 [ AGAGGTTGATTAGATACATAAATTTGTGGCGGACTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAAAATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAGTAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCGATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGATCTTCATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCGCATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8441#0 ------------------------------------------------------------
consensus_8441#1 GTCGAGCCACCAAATATGTTTGCGGTAATACAGCCCACATGAACAATCCAAATAGTATAA 60
consensus_8441#0 ------------------------------------CCAAATTAAATACCATAAAACACA 24
consensus_8441#1 CTAAATTGTGAAACTTCTCACCAAGAGCAAACTGTTCCAAATTAAATACCATAAAACACA 120
************************
consensus_8441#0 ATAATATAGAGCCAGCGGATAGAAAAAATATGCACATATCCCACATATAGATAGATATCC 84
consensus_8441#1 ATAATATAGAGCCACCGGATAGAAAAAATATGCACATATCCCCCATATAAATAAATATCC 180
************** *************************** ****** *** ******
consensus_8441#0 AGTAGAGTGCTAATTTTATTCCAGACACAAATTGCAAATGTTTCGCCTTAGTTACAGTTT 144
consensus_8441#1 AGTAGAGTGTTATTTTTATTCCAGCCCCAAATTGCAAATGTTTGCCTTAAGTTCCGGTTT 240
********* ** *********** * **************** * * **** * ****
consensus_8441#0 CATAGACTGGAAAGAAACCAAAACAAGAGGCCAAATAGGACGCGGC-AAATAAGATATTC 203
consensus_8441#1 AATAG-CTGGAAAAGAACCCAAACCAAAGGCCCAATTAGACCCGGCCAAATAAAATATTC 299
**** ******* **** **** * ***** *** *** **** ****** ******
consensus_8441#0 GACGCTAATGGAAAGCCTGCTACTACAACGCGCATAAGACCTTCGATTTCATCAATCTGT 263
consensus_8441#1 GCCGCTAATGAAAAGCTTGTTACTCCAACGCGCATAAGACTTTCGATTTCATCAATCTGT 359
* ******** ***** ** **** *************** *******************
consensus_8441#0 TTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGA 323
consensus_8441#1 TTGGCACGTTCCTCTTTGGTTTCAGGCAGAGGTTGATTAGATACATAAATTTGTGGCGGA 419
************************************************************
consensus_8441#0 CTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAA 383
consensus_8441#1 CTGTTGTTAGTAGTCAGACTAGGGCATATTGTCTGATTAACTGAAGTGAGGTACTGTAAA 479
************************************************************
consensus_8441#0 AATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAG 443
consensus_8441#1 AATCCGTTCACGACTGCATTCAAAGAAATTGGAGCAGCATGAAACGATTCACCTTGAAAG 539
************************************************************
consensus_8441#0 TAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCG 503
consensus_8441#1 TAAGCACGTAATGAAATGATATTGTCTTTCGGAGTTGATTTTGTATTAACCACTAGTCCG 599
************************************************************
consensus_8441#0 ATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGA 563
consensus_8441#1 ATAATTGATTTGAGACGGAAGTAAAACAAGTGAGGAATGGCTATTTGTTTCAGTAGATGA 659
************************************************************
consensus_8441#0 TCCTGGTTAACAGATGAATAGAAGTGACTAAAATTTTAACTGAGGAATCTGTTTGTATTC 623
consensus_8441#1 TC-------------------------------------------------------TTC 664
** ***
consensus_8441#0 ATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCG 683
consensus_8441#1 ATAACTTCCTGTGGATGTATTGAACTCAATAGGCGTAACTTGCTTATTATCGAACTGCCG 724
************************************************************
consensus_8441#0 CATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTCAGCCTCATT 743
consensus_8441#1 CATATAGGATTGAATAAACTGATCAGTGTTTTGACGTTTTTCCCAACCCTC--------- 775
***************************************************
consensus_8441#0 GCTAAACGTAAGTAACAAATCTTTGCCATAAGGCTTTAGTGACAAGTCCAAACGTGGATC 803
consensus_8441#1 ------------------------------------------------------------
consensus_8441#0 CGGTGAATTATTTTTATTTAGTAAATGATGAAATATGAATAAAGCGATCAAGGTGAACGC 863
consensus_8441#1 ------------------------------------------------------------
consensus_8441#0 AATGGGTACAATAATTTGACTGAAAACAAATATTAAATTACGTTTTGTGAATATGTAACG 923
consensus_8441#1 ------------------------------------------------------------
consensus_8441#0 CTTGGTCATTAAAGCATAAAATTGTTGGCGGTAGAACAAAAAGCCCTGATTGCGTAGTTG 983
consensus_8441#1 ------------------------------------------------------------
consensus_8441#0 TTTATGATCAACTTTAG 1000
consensus_8441#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||