cluster # 8444

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Schistosoma mansoni
cluster # 8444 cluster # 8444 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8444#0 length = 1040 sequences # 3

consensus_8444#1 length = 566 sequences # 2
consensus_8444#2 length = 330 sequences # 1

consensusID : consensus_8444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1040
fasta sequence

                              [CCGAGCCAANAATTCGGCACGAGGGCGAAAAACATCATAAAGATAAATCTTCATCCGATGTACATAAACGTCATAAGAAAAAGCATAAAAGTCGTCATTCATCTAAACACAGTTCTTCTCATCATAATTCATGGAATGGTTCCGACGATAACCGTCACCATCACAATCATCGCAATCGGGAACTTGATCGTAGCAGTAGTCTGCCTCGACCTTCTTCTGATCATCATCACCATGACAAGCATCGTCGCCGTCATCATCATAAAAAATATCGACAAGATTCACGTGATTCCAAAGACCACCGATTCCATTCACATCATAAACACTACAAACAATCGCATAGTCATGAAAATGGATACAGGTAAAAAAGAAAATAAAAAGGAGAAATCTCACTGTTTAATCCGTTGCTTCTCCAACAATCAATTATTTCTTTTTGCATGCATTCGTACACTGATGTAATCTGTACTTCAATTTTCTTTCTATCCTTAATTATACATATATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCACTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATGATGATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAAGAGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTTTCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATGTATGTAGCTATAAAAGTTTTGAAG]

[+] EMBL CD081316             [CCGAGCCAANAATTCGGCACGAGGGCGAAAAACATCATAAAGATAAATCTTCATCCGATGTACATAAACGTCATAAGAAAAAGCATAAAAGTCGTCATTCATCTAAACACAGTTCTTCTCATCATAATTCATGGAATGGTTCCGACGATAACCGTCACCATCACAATCATCGCAATCGGGAACTTGATCGTAGCAGTAGTCTGCCTCGACCTTCTTCTGATCATCATCACCATGACAAGCATCGTCGCCGTCATCATCATAAAAAATATCGACAAGATTCACGTGATTCCAAAGACCACCGATTCCATTCACATCATAAACACTACAAACAATCGCATAGTCATGAAAATGGATACAGGTAAAAAAGAAAATAAAAAGGAGAAATCTCACTGTTTAATCCGTTGCTTCTCCAACAATCAATTATTTCTTTTTGCATGCATTCGTACACTGATGTAATCTGTACTTCAATTTTCTTTCTATCCTTAATTATACATATATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGGATTTAAATTAGATCCAATG                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD075148             [                                                                               AAAGCATAAAAGTCGTCATTCATCTAAACACAGTTCTTCTCATCATAATTCATGGAATGGTTCCGACGATAACCGTCACCATCACAATCATCGCAATCGGGAACTTGATCGTAGCAGTAGTCTGCCTCGACCTTCTTCTGATCATCATCACCATGACAAGCATCGTCGCCGTCATCATCATAAAAAATATCGACAAGATTCACGTGATTCCAAAGACCACCGATTCCATTCACATCATAAACACTACAAACAATCGCATAGTCATGAAAATGGATACAGGTAAAAAAGAAAATAAAAAGGAGAAATCTCACTGTTTAATCCGTTGCTTCTCCAACAATCAATTATTTCTTTTTGCATGCATTCGTACACTGATGTAATCTGTACTTCAATTTTCTTTCTATCCTTAATTATACATATATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTATTTAAATTAGATCCAATGATCCAGA                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD075206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCACTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATGATGATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAAGAGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTTTCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATGTATGTAGCTATAAAAGTTTTGAAG]




>consensus_8444#0
CCGAGCCAANAATTCGGCACGAGGGCGAAAAACATCATAAAGATAAATCTTCATCCGATG
TACATAAACGTCATAAGAAAAAGCATAAAAGTCGTCATTCATCTAAACACAGTTCTTCTC
ATCATAATTCATGGAATGGTTCCGACGATAACCGTCACCATCACAATCATCGCAATCGGG
AACTTGATCGTAGCAGTAGTCTGCCTCGACCTTCTTCTGATCATCATCACCATGACAAGC
ATCGTCGCCGTCATCATCATAAAAAATATCGACAAGATTCACGTGATTCCAAAGACCACC
GATTCCATTCACATCATAAACACTACAAACAATCGCATAGTCATGAAAATGGATACAGGT
AAAAAAGAAAATAAAAAGGAGAAATCTCACTGTTTAATCCGTTGCTTCTCCAACAATCAA
TTATTTCTTTTTGCATGCATTCGTACACTGATGTAATCTGTACTTCAATTTTCTTTCTAT
CCTTAATTATACATATATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAAT
TATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGT
CAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTA
TTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCACTT
CTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATGATG
ATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAAGAGAGAGACTGA
AGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGT
TTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTTTCTC
TTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATGTATG
TAGCTATAAAAGTTTTGAAG

consensusID : consensus_8444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence

                              [CCCCGAGGCCAANAATGCGGCACGAGGTATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCACTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATGATGATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAAGAGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTTTCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATGTATGTAGCTATAAAAGTT]

[+] EMBL CD081372             [CCCCGAGGCCAANAATGCGGCACGAGGTATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTTGTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCACTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATGATGATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAAGAGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTTTCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATGTATGTAGCTATAAAAGTT]
[-] EMBL CD134380             [                                                                                                                                                                                                     ATTAGATCCGATGATCCAGACATAAAAAAAATGTACAGTTGTCGTCTTTTCACTTCTTTAATCCCATCATGTTATTGATGAATAACGATCATACAGCGAACT GGGGGGATGATGATATATTAACGTCGTATACATTGTGCAAGTTCATCAAAGCTGAATAAAGGGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAGTGGTTTTACTGCTTCATTATTAATATTCTGTATTATTGTCTTTAATATTATTTATTTGTTTCTCTTACTTNTTTACTTTAAA                                                        ]




>consensus_8444#1
CCCCGAGGCCAANAATGCGGCACGAGGTATAAACACATTTTCTTGCATTGACCTACCATA
TCTGCAAAGAATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAG
TTGCCTCTCTGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTT
CTCAATTTTGTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTC
TTCTTTTCACTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTC
ATCCATATGATGATATATTAACGTCGTATACATTGTTCAAGTTCATCAAAGTCGAATAAA
GAGAGAGACTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATAT
ATACATAGTGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATT
GATTTGTTTCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGT
CTTTTATGTATGTAGCTATAAAAGTT

consensusID : consensus_8444#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [GTCCGAGGCTAACCACAATCAGTACTACAAAAGGACAAACCACTTCATCTCAATCACCTTCAGTTAATACTGTAGGCTTAAAAAATAAACAACGTGAATTGACGAATCCTTTAGTGGACTATTCTTACGAGGAATCGGACAGTGATAAAAATGTTTCACCACCTCCTCCCAAACGTAGCCGAACATCACACAGTGGCTCCGACTCTGGTACTGTATGGGTTCCTGGCAATCATAATGAAACATCCGAAAAACATCATAAAGATAAATCTTCATCCGATGTACATAAACGTCATAAGAAAAGCATAAAAGTCGTCATTCATCTAAACACAG]

[+] EMBL CD078083             [GTCCGAGGCTAACCACAATCAGTACTACAAAAGGACAAACCACTTCATCTCAATCACCTTCAGTTAATACTGTAGGCTTAAAAAATAAACAACGTGAATTGACGAATCCTTTAGTGGACTATTCTTACGAGGAATCGGACAGTGATAAAAATGTTTCACCACCTCCTCCCAAACGTAGCCGAACATCACACAGTGGCTCCGACTCTGGTACTGTATGGGTTCCTGGCAATCATAATGAAACATCCGAAAAACATCATAAAGATAAATCTTCATCCGATGTACATAAACGTCATAAGAAAAGCATAAAAGTCGTCATTCATCTAAACACAG]




>consensus_8444#2
GTCCGAGGCTAACCACAATCAGTACTACAAAAGGACAAACCACTTCATCTCAATCACCTT
CAGTTAATACTGTAGGCTTAAAAAATAAACAACGTGAATTGACGAATCCTTTAGTGGACT
ATTCTTACGAGGAATCGGACAGTGATAAAAATGTTTCACCACCTCCTCCCAAACGTAGCC
GAACATCACACAGTGGCTCCGACTCTGGTACTGTATGGGTTCCTGGCAATCATAATGAAA
CATCCGAAAAACATCATAAAGATAAATCTTCATCCGATGTACATAAACGTCATAAGAAAA
GCATAAAAGTCGTCATTCATCTAAACACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8444#0      CCGAGCCAANAATTCGGCACGAGGGCGAAAAACATCATAAAGATAAATCTTCATCCGATG 60
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      TACATAAACGTCATAAGAAAAAGCATAAAAGTCGTCATTCATCTAAACACAGTTCTTCTC 120
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      ATCATAATTCATGGAATGGTTCCGACGATAACCGTCACCATCACAATCATCGCAATCGGG 180
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      AACTTGATCGTAGCAGTAGTCTGCCTCGACCTTCTTCTGATCATCATCACCATGACAAGC 240
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      ATCGTCGCCGTCATCATCATAAAAAATATCGACAAGATTCACGTGATTCCAAAGACCACC 300
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      GATTCCATTCACATCATAAACACTACAAACAATCGCATAGTCATGAAAATGGATACAGGT 360
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      AAAAAAGAAAATAAAAAGGAGAAATCTCACTGTTTAATCCGTTGCTTCTCCAACAATCAA 420
consensus_8444#1      ------------------------------------------------------------
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      TTATTTCTTTTTGCATGCATTCGTACACTGATGTAATCTGTACTTCAATTTTCTTTCTAT 480
consensus_8444#1      ---------------------------------------------------CCCCGAGGC 9
consensus_8444#2      ---------------------------------------------------GTCCGAGGC 9
                                                                                  

consensus_8444#0      CCTTAATTATACATA---TATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAG 537
consensus_8444#1      CAANAATGCGGCACGAGGTATAAACACATTTTCTTGCATTGACCTACCATATCTGCAAAG 69
consensus_8444#2      TAACCACAATCAGTACTACAAAAGGACAAACCACTTCATC--TCAATCACCTTCAGTTAA 67
                           *             * **  ***      * ***    * * **  *      * 

consensus_8444#0      AATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTC 597
consensus_8444#1      AATTATTTTCCCATCAAGAATGCCCACTGACCTGGTGTATTGCTTATGAAGTTGCCTCTC 129
consensus_8444#2      TACTGTAGGCTTAAAAAATAAACAACGTGAATTGACGAATCCTTTAGTGGACTATTCTTA 127
                       * * *   *  *  **  *  *    ***  **  * **   ***      *     * 

consensus_8444#0      TGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTT 657
consensus_8444#1      TGTCAACTTTATTATCCCAGCTGTTTGTTTGTTTTCCTTATTTTATATTTTCTCAATTTT 189
consensus_8444#2      CGAGGAATCGGA-----CAGTGATAAAAATGTTTCAC------CACCTCCTCCCAAAC-- 174
                       *   * *         ***   *     *****  *       *  *  ** ***    

consensus_8444#0      GTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCA 717
consensus_8444#1      GTATTTAAATTAGATCCAATGATCCAGACATAAAAAAAATGTACAGTTGTCTTCTTTTCA 249
consensus_8444#2      GTAGCCGAACATCACACAGTGGCTCCGACTCTGGTA--CTGTATGGGT----TCCTGGCA 228
                      ***    **    *  ** **   * ***      *   ****  * *    ** *  **

consensus_8444#0      CTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATG 777
consensus_8444#1      CTTCTTTAATCCCATCATGTTATTGATCAATAACGATCATACAGCAAACTCATCCATATG 309
consensus_8444#2      AT----------CATAATGA-AACATCCGAAAAACATCATAAAGATAAATC-TTCATCCG 276
                       *          *** ***  *     * * **  ****** **  ** ** * ***  *

consensus_8444#0      ATGATATATTAACGTCGTATACATTGT-TCAAGTTCATCAAAGTCGAATAAAGAGAGAGA 836
consensus_8444#1      ATGATATATTAACGTCGTATACATTGT-TCAAGTTCATCAAAGTCGAATAAAGAGAGAGA 368
consensus_8444#2      ATG-TACATAAACGTCATAAGAAAAGCATAAAAGTCGTCAT--TCATCTAAACACAG--- 330
                      *** ** ** ****** **   *  *  * **  ** ***   **   **** * **   

consensus_8444#0      CTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAG 896
consensus_8444#1      CTGAAGAGATGCATTGTAATTTATCATTTCATAAAATGAGGGTTATATATATATACATAG 428
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      TGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTT 956
consensus_8444#1      TGGTTTTACTGCTTCATTATTAATGTTCTGTATTATTGTCTTTGATGTTATTGATTTGTT 488
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      TCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATG 1016
consensus_8444#1      TCTCTTACTTGTTTACTTTAAAGTGATGTTGACTACGCTCTTTTTGCATTGTCTTTTATG 548
consensus_8444#2      ------------------------------------------------------------
                                                                                  

consensus_8444#0      TATGTAGCTATAAAAGTTTTGAAG 1040
consensus_8444#1      TATGTAGCTATAAAAGTT------ 566
consensus_8444#2      ------------------------