These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 876 fasta sequence [AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGGATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT-GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCATGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACCCAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTGTGCATTCAATGATCCTGCAATCATAACTGCATGAAC] [+] EMBL CD074221 [AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGGATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTC AACGCATCACTGATACCTGCTTGATTTCC ] [-] EMBL CD127599 [ TCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTATCTATGGTTGACCGGGAATCAC ] [+] EMBL CD126032 [ GTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTNGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACG ] [-] EMBL CD125961 [ TTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGTTGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCATGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACCCAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTGTGCATTCAATGATCCTGCAATCATAACTGCATGAAC] consensusID : consensus_8448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [CATAGTAGGTTGGTAGTTTGTCCATTTAAAGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGA-GT-TTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACG] [+] EMBL CD128020 [CATAGTAGGTTGGTAGTTTGTCCATTTAAAGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGA GT TTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACG] [-] EMBL CD068604 [ TGCCATGTGTTCATTCAAATCGAACATGTGAATACGTCCATGATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGACATGTTCTTTc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8448#0 AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGG 60 consensus_8448#1 ------------------------------------------------------------ consensus_8448#0 ATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAA 120 consensus_8448#1 ------------------------------CATAGTAGGT-TGGTAGTTTGTCCATTTAA 29 *** ** ************* *** consensus_8448#0 AGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTG 180 consensus_8448#1 AGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTG 89 ********************** ************************************* consensus_8448#0 TGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACAT 240 consensus_8448#1 TGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACAT 149 ************** ********************************************* consensus_8448#0 GTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACA 300 consensus_8448#1 GTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACA 209 ************************************************************ consensus_8448#0 TTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTG 360 consensus_8448#1 TTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTG 269 ************************************************************ consensus_8448#0 GTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATG 420 consensus_8448#1 GTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATG 329 ************************************************************ consensus_8448#0 TATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAG 480 consensus_8448#1 TATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAG 389 ************************************************************ consensus_8448#0 ACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAG 540 consensus_8448#1 ACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAG 449 ************************************************************ consensus_8448#0 TGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTG 600 consensus_8448#1 TGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTG 509 ************************************************************ consensus_8448#0 ATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGC 660 consensus_8448#1 ATGACCTTCAAACG---------------------------------------------- 523 ************** consensus_8448#0 TCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCA 720 consensus_8448#1 ------------------------------------------------------------ consensus_8448#0 TGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACC 780 consensus_8448#1 ------------------------------------------------------------ consensus_8448#0 CAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTG 840 consensus_8448#1 ------------------------------------------------------------ consensus_8448#0 TGCATTCAATGATCCTGCAATCATAACTGCATGAAC 876 consensus_8448#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||