These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 836 fasta sequence [AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT] [-] EMBL CD194383 [AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTG ] [-] EMBL CD201581 [ AACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTT ] [+] EMBL CD071941 [ CAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTC TTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCA ] [+] EMBL CD091922 [ TCATTTCTTTTTTTATCTTGAAGTGCCGTTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTCGGTCTGAGGTACTGNNNAGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACTTTTC ] [-] EMBL CD149768 [ AGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTACTAAAGACTTGTCTCTGTACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT] consensusID : consensus_8452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA] [+] EMBL CD201339 [TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8452#0 AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATA 60 consensus_8452#1 ------------------------------------------------------------ consensus_8452#0 ACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAA 120 consensus_8452#1 ------------------------------------------------------------ consensus_8452#0 TGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAA 180 consensus_8452#1 ------------------------------------------------------------ consensus_8452#0 TGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTG 240 consensus_8452#1 -------------------------TTGAGGACACCGAGGAC--------TTCGATTTCG 27 ** * ** * ** ** * * consensus_8452#0 AAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGA-CCACTTGGTGAGCTAGGTT 299 consensus_8452#1 AAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTG 87 ** * * * * ** * *** * * * * * *** * ** **** consensus_8452#0 GGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTT 359 consensus_8452#1 GGT---AAGACCGATTCTAAG--AATTCATTACATTGAAAGTAAATT---ACCAGTTATT 139 *** * * * * * ** * ** * **** ** * * ** * ** consensus_8452#0 CGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAA 419 consensus_8452#1 ACTGGTCGCCGCGTTCGCACTATTCAC---TGGTTCAGTCCGCAAAATTTCTTTATTCAG 196 *** * *** * *** ** **** * * * * * * consensus_8452#0 TAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCT-TGATTTCCA 478 consensus_8452#1 TTAGTAGAGACTTAGTATGA--TTGAATTGAAGTCACCCACATATATAGTATGCCTTTCG 254 * * * *** ** ** ** * * *** * * * ** ** * consensus_8452#0 ACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCC 538 consensus_8452#1 ATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTG------TTTATT 308 * * **** * * * * * * * ** ** ** * * consensus_8452#0 TCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGG 598 consensus_8452#1 TGGCTAGATACAGATTCGATTGTCTTTAAA---TTGGATTAA---GAGGTTAAAATAAGT 362 * * *** * * * **** *** ** * * **** *** consensus_8452#0 TTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCT 658 consensus_8452#1 GTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTC--ATTAACTCACATCCA 420 * * ** * ** * ** **** **** * * *** * * consensus_8452#0 TGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGAC 718 consensus_8452#1 TTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTAT-ATGTCTGCCACAGTTTAAAG 479 * * * * * * * * ** ***** ** **** * ***** * * consensus_8452#0 TACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTG 778 consensus_8452#1 CA---TATTTAGTTTGTTTC---------GCTTAACTTGATTGTCCATTTTATCCTTTTA 527 * * ***** * *** ** * **** ** * * *** consensus_8452#0 GAT--ACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT 836 consensus_8452#1 GACCAACCTAGCTCACCAA----------------------------------------- 546 ** ***** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||