These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence [GGAAATAACATTTATACAAGATCAAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTTGTTACATGGAAGATATTATTATTATTATATTATTGTTATTATTATTATTGTGTTATCCTTATAATTTCCCCTTCCAGCCATATAGAATGGTGAAGTCTAGTAAGCCCTTCTAGAGAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTGCTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTTTGTTTGGTCAGACTCATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTAATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCGCTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGTCGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATAATTGTAATTAATAATANAAATGAT-AGTAATTCCCATATCTAATTTAATGTTTATTATCATTATAATNNTATG-TTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTATTTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTACGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTAAACTCCAATTT] [+] EMBL CD078846 [GGAAATAACATTTATACAAGATCAAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTTGTTACATGGAAGATATTATTATTATTATATTATTGTTATTATTATTATTGTGTTATCCTTATAATTTCCCCTTCCAGCCATATAGAATGGTGAAGTCTAGTAAGCCCTTCTAGAGAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTGCTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTTTGTTTGGTCAGACTCATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTAATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCGCTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGTCGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATAATTGTAATTAATAATANAAATGAT AGTAATTCCCATATCTAATTTAATGTTTATTATCATTATAATNNTATG TTAATTATAATTAAACTT ] [-] EMBL CD073307 [ CATAATATTTGATTGATTCCCAGCCAAAATAAATTATATAATTGTAATTAATAATA AAATGATAAGTAATTCCCATATTTAATTTAATGTTTATTATCATTATAAT TTATGTTTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTATTTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTACGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTAAACTCCAATTT] consensusID : consensus_8457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA] [-] EMBL CD154169 [ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA] [-] EMBL CD154209 [ nTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA] consensusID : consensus_8457#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATCAAAATTCTATCATAAATTAACATTTTAAATAATTTAGTCTGTATAAAATTAGATTAATAATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACTGATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGAGAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTGCTTATGCAGAATTATTACATCTTTCTTTCTGTACTTATTTAGGGCAGACTCATTTATTCTTTCTTATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC] [+] EMBL CD084327 [GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATCAAAATTCTATCATAAATTAACATTTTAAATAATTTAGTCTGTATAAAATTAGATTAATAATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACTGATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGAGAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTGCTTATGCAGAATTATTACATCTTTCTTTCTGTACTTATTTAGGGCAGACTCATTTATTCTTTCTTATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC] consensusID : consensus_8457#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTTCTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTCATTTTTACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATAATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCGCTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGTTGGATTTGGCCTCTCAATTCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACTAATGTGTCTTCAACGTGAATCTCGACTACCCTTAATCAAGTAGG] [-] EMBL CD063034 [NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTTCTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTCATTTTTACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATAATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCGCTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGTTGGATTTGGCCTCTCAATTCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACTAATGTGTCTTCAACGTGAATCTCGACTACCCTTAATCAAGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8457#1 ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTT 60 consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 -------------------------------------GGAAATAACATTTATACAAGATC 23 consensus_8457#2 -----GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATC 55 consensus_8457#1 AAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAA 120 consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 AAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTT 83 consensus_8457#2 AAAATTCTATCATAAATTAAC--ATTTTAAATAATTTAGTCTGTATAAAATTAGATTAAT 113 consensus_8457#1 A--AAATTGACAACATAACA-ATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTT 177 consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 GTTACATGGAAGATATTATT-ATTATTATATTATTGTTATTATTATTATTGTGTTATCCT 142 consensus_8457#2 AATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACT 173 consensus_8457#1 TATTGTG-CC----CCTTCCAGCCATA--AGAATGGTGAAGCCTAGTAGACCCTTCTGGA 230 consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 TATAATTTCC----CCTTCCAGCCATAT-AGAATGGTGAAGTCTAGTAAGCCCTTCTAGA 197 consensus_8457#2 GATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGA 233 consensus_8457#1 GAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTA 290 consensus_8457#3 --------------NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTT 46 consensus_8457#0 GAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTG 257 consensus_8457#2 GAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTG 293 * * * * * * ***** **** * consensus_8457#1 CTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTT---TCATCGGGCAAACTC 347 consensus_8457#3 CTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTC 106 consensus_8457#0 CTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTT--TGTTTGGTCAGACTC 315 consensus_8457#2 CTTATGCAGAATTATTACAT----CTTTCTTTCTGTACTTAT-----TTAGGGCAGACTC 344 **** ****** ******* ** * * * ** * * ** * **** consensus_8457#1 ATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTA 407 consensus_8457#3 ATTTTT-ACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATA 165 consensus_8457#0 ATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTA 375 consensus_8457#2 ATTTATTCTTTCT-TATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC--- 400 ** * * ** * ******* * ** ** *** * *** * *** *** consensus_8457#1 ATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCG 467 consensus_8457#3 ATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCG 225 consensus_8457#0 ATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCG 435 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 CTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGT 527 consensus_8457#3 CTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGT 285 consensus_8457#0 CTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGT 495 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 CGGATTTTGCCTCTCAAA-GAAAAATATAACAAAGAGAAA-ACCAATAAGTTAATTCAAC 585 consensus_8457#3 TGGATTTGGCCTCTCAAT-TCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACT 344 consensus_8457#0 CGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATA 555 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 AA---------------------------------------------------------- 587 consensus_8457#3 AATGTGTCTT-CAACGTGAATCTCGACTACCCTTA-ATCAAGTAGG-------------- 388 consensus_8457#0 ATTGTAATTAATAATANAAATGATAGTAATTCCCATATCTAATTTAATGTTTATTATCAT 615 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 ------------------------------------------------------------ consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 TATAATNNTATGTTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTAT 675 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 ------------------------------------------------------------ consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 TTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTA 735 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 ------------------------------------------------------------ consensus_8457#3 ------------------------------------------------------------ consensus_8457#0 CGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTA 795 consensus_8457#2 ------------------------------------------------------------ consensus_8457#1 ----------- consensus_8457#3 ----------- consensus_8457#0 AACTCCAATTT 806 consensus_8457#2 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||