These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 804 fasta sequence [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGAA] [+] EMBL CD117715 [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTANAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTA ] [+] EMBL CD117045 [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTGGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAG TACATTAGATGAAGCACTGTTTGGATTA ] [+] EMBL CD186431 [ ATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATAATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGA ] [+] EMBL CD111458 [ AGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCTGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGA ] [-] EMBL CD110850 [ GTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGAA] [+] EMBL CD111567 [ agaTGGAAGTATTTGATGCATTTATTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGC TTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCGAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAG ] consensusID : consensus_8470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [AGTGGAAGTATTTGATGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTAGTAAGG] [-] EMBL CD191235 [AGTGGAAGTATTTGATGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTAGTAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8470#0 GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTC 60 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 TTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCT 120 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 GCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAA 180 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 ACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGA 240 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 GCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAA 300 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 GTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACT 360 consensus_8470#1 --------------------------------AGTGGAAGTATTTGAT------------ 16 * *********** * consensus_8470#0 TGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTA 420 consensus_8470#1 ---GCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTA 73 ********************************************************* consensus_8470#0 GTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCA 480 consensus_8470#1 GTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCA 133 ************************************************************ consensus_8470#0 GAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACA 540 consensus_8470#1 GAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTT-GCAAGCTCCCGGACA 192 ************* ****************************** *************** consensus_8470#0 TGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATC 600 consensus_8470#1 TGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATC 252 ************************************************************ consensus_8470#0 TCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTT 660 consensus_8470#1 TAGTAAGG---------------------------------------------------- 260 * **** consensus_8470#0 ATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTG 720 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 CCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGC 780 consensus_8470#1 ------------------------------------------------------------ consensus_8470#0 TACTAATTCAGAAAAATGCTCGAA 804 consensus_8470#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||