These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 770 fasta sequence [CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAATGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTGGATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG-CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG-ATAAAGATTTCGAACACGCTGTTGAACCTATACAT-GGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTACCCTAACCAGACAAAACATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCGCGATATATAGTGAGCGGTACAACCGAATCGAGATTCGATCTGCCTGCATTTGCGTGGAAATCTTGTCGCACAGATAGTGTCTTTTACTCCGGCGTACCCAGCACAGACTATTTGTTAATGTAACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCTCAC] [+] EMBL CD077749 [CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAATGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTGGATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACANATAAAGGCTTAGTATCGGCT ] [+] EMBL CD111852 [ TTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG ATAAAGATTTCGAACACGCTG ] [+] EMBL AI413084 [ AGTNGCAGAADACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG ATAAAGATTTCGAACACGCTGTTGAACCTATACAT GGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTACCCTAACCAGACAAAACATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCGCGATATATAGTGAGCGGTACAACCGAATCGAGATTCGATCTGCCTGCATTTGCGTGGAAATCTTGTCGCACAGATAGTGTCTTTTACTCCGGCGTACCCAGCACAGACTATTTGTTAATGTAACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCTCAC] [+] EMBL AI374502 [ CCTCATGAATCTACCCTTCTTTCTTCCTGTTGTTGATACAAATAAAGGCTTAGTATCTCCTGATGATGATTTTGGTAATGGATTATCAACTAAGCCAACAGTTCATTAATAAAACAACGATTCGTAAACGGCGTGGGTTGTTGGAATAAAGATTTCGACCACGCTGTTGAACCTATACATGGGCTTATCTATGAGACTTATTCGAGCG AATCAAATG TGAATTCGATC AATTTCT ] consensusID : consensus_8479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 592 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACG-ACTCATGCACAGAACAATTTGTTAAATGT] [+] EMBL CD080565 [CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAATTTTCAAAC CGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAA ] [-] EMBL CD111575 [ GTATCGGCTGATGATGATTTTGGTAATGGA TTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGG GTTGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACG ACTCATGCACAGAACAATTTGTTAAATGT] [-] EMBL CD111307 [ TGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTNATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACGTACTCATGCACAGAACAATTTGTTAAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8479#0 CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAA 60 consensus_8479#1 ------------------------------------------------------------ consensus_8479#0 TGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTG 120 consensus_8479#1 ------------------------------------------------------------ consensus_8479#0 GATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACT 180 consensus_8479#1 -------CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACT 53 **** * ** * ***************************** consensus_8479#0 CATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAAT 240 consensus_8479#1 CATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAAT 113 ************************************************************ consensus_8479#0 AAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATT-ATCAACTAAGCAACAGTT 299 consensus_8479#1 AAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTT 173 ************** ************************** ****************** consensus_8479#0 CATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGC 359 consensus_8479#1 CATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGC 233 ************************************************************ consensus_8479#0 TGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATT 419 consensus_8479#1 TGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATT 293 ************************************************************ consensus_8479#0 CGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCG 479 consensus_8479#1 CGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCG 353 ************************************************************ consensus_8479#0 TCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTA-CCCTAACCAGACAAAA-C 537 consensus_8479#1 TCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAAC 413 ***************************************** **************** * consensus_8479#0 ATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCG-CGATATATAGT 596 consensus_8479#1 ATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAAT 473 ******************** *** **** ********* ***** * ********* * consensus_8479#0 GAGCGG--TACAACCGAATCGAGATT-CGATCT-GCCTGCATTTGCGTGGAAATCTTGTC 652 consensus_8479#1 TAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTT 533 * * * *** ************ ****** ** ********* ************ consensus_8479#0 GCA-CAG-ATAGTGTC-TTTTACTCCGGCGTACCCAGCACAGA-CTATTTGTTAA-TGTA 707 consensus_8479#1 GCAACAGCATAGTGACATTTTATTCCGACGACTCATGCACAGAACAATTTGTTAAATGT- 592 *** *** ****** * ***** **** ** * ******* * ********* *** consensus_8479#0 ACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCT 767 consensus_8479#1 ------------------------------------------------------------ consensus_8479#0 CAC 770 consensus_8479#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||