These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1104 fasta sequence [TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT-GTCGATATATCATCACTGAATCTGTCTGTCG-TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG] [-] EMBL CD060016 [TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT GTCGATATATCATCACTGAATCTGTTTGTCGTTTCCAA ] [+] EMBL CD081053 [ GATCACAACGTNGTCGATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG] [-] EMBL CD161486 [ ATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTT ] consensusID : consensus_8509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 566 fasta sequence [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA] [+] EMBL BG932000 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCG ] [-] EMBL BF936419 [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA] [+] EMBL BG931984 [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATG ] consensusID : consensus_8509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC] [+] EMBL BG930421 [GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACT 60 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 ACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGT 120 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTAC 180 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTG 240 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTT 300 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 ATTATGAGATCACAACGTGTCGATATATCATCACTGAATCTGTCTGTCGTTCCAACCTGC 360 consensus_8509#1 ------------------------------------------------------------ consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 CTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAA 420 consensus_8509#1 --------------------------------------------CCCGCCGTTTACCCGC 16 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 ACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGA 480 consensus_8509#1 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 76 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 ACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCA 540 consensus_8509#1 AAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGAC---AGTCGGATTCCCCTG 133 consensus_8509#2 ------------------------GTATTGTGATCGACGGAG---GGTCTTCTTTCCCCG 33 consensus_8509#0 AGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNN 600 * * * ** consensus_8509#1 GT--CCGTGCCAGTTCTGAG---TTAGCCGTCGCG-CGCCAGACCATGGAAG-TACAGCC 186 consensus_8509#2 GTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA---TAGGGAC 90 consensus_8509#0 NTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGC 660 * ** ** * ** * * * ** * consensus_8509#1 G-----CTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACA 241 consensus_8509#2 A-----GTGGGAATCTCGTT-AATCCATTCATGCGCGTCACTAATTAGATGAC------- 137 consensus_8509#0 GTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACA 720 * * ** * ** * * * consensus_8509#1 GCTGAAACCGCCCACGATC---GACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGC 298 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 CTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTAT 780 consensus_8509#1 ACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATC 358 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 ACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTC 840 consensus_8509#1 TCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTT 418 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 CCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGC 900 consensus_8509#1 GCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCT 478 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 NNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAG 960 consensus_8509#1 GCGGATATGGGTACGGCCTGCCA-CGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGC 537 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATC 1020 consensus_8509#1 CGACAAGAGCGTTCCGGACACCACAAGAA------------------------------- 566 consensus_8509#2 ------------------------------------------------------------ consensus_8509#0 TAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCT 1080 consensus_8509#1 ------------------------ consensus_8509#2 ------------------------ consensus_8509#0 TTTCATCTCATATGGAAATATATG 1104 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||