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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1070 fasta sequence
[AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCTCGGTGGAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGGGTGG--TGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTCAAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAAATGCTTGTAAAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCTAGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT]
[+] EMBL CD081354 [AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGA ]
[+] EMBL CD135217 [ CAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAA ]
[-] EMBL CD075186 [ GACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCTCGGTGGAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCTAGGTGG TGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTCAAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAAATGCTTGTAAAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCTAGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT]
[+] EMBL CD148937 [ GTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGGGTGGCTTGGTGAgcgaaact ]
[+] EMBL CD148920 [ GTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGG ]
consensusID : consensus_8510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence
[ATTCCACTGCTTGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGATGTTACAACCATGTATGATGGTTATAAATTCATCACCCGTCAACAGCTAGCAGATTTGGGAATGTCAGAGCTCATCGGAACTCAGTTTCTGAGAGCTTACATGCACGGATATTTCATTTCTGCAAATCTGTACAACCAAGTACAAGACCATCTGGGGATTAATGAGAAATCTCTTACCCAAACTGTCAAGCCTAAATATCCTGACAACGTACCTAAAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGCCGACCAGCGCTTTTCCAAACTTTCAGATAATCCAAAGCTTACGTACAGTACTGTAGATGGCGATTCAGACCTCATTCAAATTCATCAAGCAAGATTGGAGAAGAAGCGCAGGCGTAAAGAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTTGTATCTAATTCTGTAAATAATGCCTTCAATAAGTTATGTTCTGAAAAATTTTCCGTGTTATTAGTTGTTAGTTCGCCTTATATGTTTTTCAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTC]
[-] EMBL CD073340 [ATTCCACTGCTTGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGATGTTACAACCATGTATGATGGTTATAAATTCATCACCCGTCAACAGCTAGCAGATTTGGGAATGTCAGAGCTCATCGGAACTCAGTTTCTGAGAGCTTACATGCACGGATATTTCATTTCTGCAAATCTGTACAACCAAGTACAAGACCATCTGGGGATTAATGAGAAATCTCTTACCCAAACTGTCAAGCCTAAATATCCTGACAACGTACCTAAAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGCCGACCAGCGCTTTTCCAAACTTTCAGATAATCCAAAGCTTACGTACAGTACTGTAGATGGCGATTCAGACCTCATTCAAATTCATCAAGCAAGATTGGAGAAGAAGCGCAGGCGTAAAGAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTTGTATCTAATTCTGTAAATAATGCCTTCAATAAGT ]
[-] EMBL CD097828 [ AAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTGGTATCTAATTCTGTAAATAATGCCTTCAATAAGTTATGTTCTGAAAAATTTTCCGTGTTATTAGTTGTTAGTTCGCCTTATATGTTTTTCAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8510#0 AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGT 60
consensus_8510#1 -------------------------------------------------ATTCCACTGCT 11
** * * *
consensus_8510#0 CTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTAC-CAAGCCCGA 119
consensus_8510#1 TGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGA 71
* * * * * ***** * * * ** ** ** * * * ** **
consensus_8510#0 TCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTC 179
consensus_8510#1 TGTTACAACCATGTATGATGGTTATAAA---TTCATCACCCGTCA----ACAGCTAGCAG 124
* ** * * *** * * *** * ** * * ** ** *
consensus_8510#0 GTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAG 239
consensus_8510#1 ATTT---GGGAATGTCAGAGCTCATCGGAACTCAG--TTTCTGAGAGCTTACATGCACGG 179
* * * ** *** ** * ** *** * * * ** * * ** * *
consensus_8510#0 TTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCC 299
consensus_8510#1 ATATTTCAT--TTCTGCAAATCTGTACAACCAAGTACAAGAC--CATCTGG----GGATT 231
* ** * ** * ** **** * * *** * * **
consensus_8510#0 ATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTAT-TATCCA 358
consensus_8510#1 AATGAGAAATCTCTTACCCAAACTGTCA-----AGCCTAAATATCCTGACAACGTACCTA 286
* * * * ** * ** *** ** * * **** * * ** * *
consensus_8510#0 GTAACAGCTTAAATCTCAGAAAAA-AATCACAAAATATGGTATCTCTTTTACATCTTTTG 417
consensus_8510#1 AAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGC--CGACCA 344
* * * *** * *** ** * * * * * *
consensus_8510#0 GTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGAT 477
consensus_8510#1 GCGCTTTTCCAAACTTTCAGATAATCCAA--AGCTTACGTACAGTACTGTAGATGGCGAT 402
* * *** * * * ** * * * * *** * * * ** ***
consensus_8510#0 TTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCC 537
consensus_8510#1 TCAGACCTCATTCAA---ATTCATCAAGCAAGATTGGA---GAAGAAGCGCAGGCGTAAA 456
* * * ** ** *** ** * * ** * * ** * ******
consensus_8510#0 ACGCGAAAATCAAAATTGGCTTCCC-AGCGTAGTAGGCAGT--ATTACAGCGATATTGAT 594
consensus_8510#1 GAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTG 516
* * * ** *** * * *** ** ** ** * * ** **
consensus_8510#0 CAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAA 654
consensus_8510#1 CATATATAAACTTCAAATGTTTTGTATCTAATT-CTGTAAATAATGCCTTCAATAAGTTA 575
** * **** * * * * * * * ** *** ** * * *** * *
consensus_8510#0 GATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCT 714
consensus_8510#1 TGTTCTGAAAAATTTTCCGTGT-TATTAGT-----TGTTAGTTC-GCCTTATATGTTTTT 628
* ** *** * ** ** **** ** * * * * * * * * *
consensus_8510#0 CGGTG-GAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATT 773
consensus_8510#1 CAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGA--- 685
* * **** * * ** * ** ** * * * * * ***
consensus_8510#0 CGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGG 833
consensus_8510#1 TGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAA-GT 744
* * * ** * ** * * ** * * * * * * *
consensus_8510#0 TCGGGGTGGTGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTC 893
consensus_8510#1 TCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAAC--TCGTCTTT 802
*** *** *** * ** * ** *** * **** ****
consensus_8510#0 AAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAA--ATGCTTGTA 951
consensus_8510#1 AAGCGAT-------TCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATA 855
** ** * * ** ****** * * * * * * ** * **
consensus_8510#0 AAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCT 1011
consensus_8510#1 GTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGC-ATTTCG---TTCT 911
* ** ** * * * * * **** * * * **** ****
consensus_8510#0 AGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT 1070
consensus_8510#1 GGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGT---CGATGTATCTTC--- 964
* * *** ** * * * * **** *** * *** ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||