These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 849 fasta sequence [CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAATACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAA-CGTGAACTACCCGTTTCG-TTG-AAGACTATNCTTACGAA-TGCGCATGTACTCTATGACA-TTTNCATATAAA] [+] EMBL CD131969 [CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACA ] [+] EMBL CD131935 [CAGCCGCGCTTTTGGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACA ] [+] EMBL CD079491 [ GTAGCAAGCTATATTTTGACGTTCAATTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAATACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAA CGTGAACTACCCGTTTCG TTG AAGACTATNCTTACGAA TGCGCATGTACTCTATGACA TTTNCATATA ] [+] EMBL SMAA17939 [ TCAACTGGGAGCAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGTAAAAGCAAACTTACAAAAGTTGGAGGACACCCTGACTTGTACCTCATAACCTACCACTAATACGTCCTTCA ] [-] EMBL CD073760 [ TCCTTCATGCCAGATTTATG TTATTGGAGAATCAACATTTCTCTTTCCTGCCATATGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGTAAGTATTTCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTACTGTTATTATTTTAATCTGAATGAACAAAAAGCTTCTTTCTTTTTTCTAGGCTGAGAAACCGTGAACTA CCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACATTTTACATATAAA] [+] EMBL CD077967 [ AGTCAAGTGAAAATTTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATCAAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTGTCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAATTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCT ] consensusID : consensus_8533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAACCGTGAACTACCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACNNTTTCCATATAAAATATATATG] [-] EMBL SMAA69927 [ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCTTCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATACCTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAACCGTGAACTACCGTTTCGTTTGAAAGACTATCCTTACGAATTGCGCATGTACTCTATGACNNTTTCCATATAAAATATATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8533#0 CAGCCGCGCTTTTTGACTTAAACGATTGTAGCAAGCTATATTTTGACGTTCAATTGGGAG 60 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 CAGGAACGACCTGAAACAACAACAGAACAGTCAGGAGCGCGCACGACGCACTTCCTGGGT 120 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 AAAAGCAAACTTACAAAAGTTGGAGGACACACTGACTTGTACATCATAACCTACCACTAA 180 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 TACGTCCTTCATGCCAGATTTATGTTTATTGGAGAATCAACATTTCTCTTTCCTGCCATA 240 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 TGTGAAATTCTGATCTTGGATCATGATGAACACAATTCTATCGTTCAGTCAAGTGAAAAT 300 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 TTTCCAGTCAGACAGTCAAAGTTATTGCTATGAGATTCATCAGCGAATAGTTAATTTATC 360 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 AAACCAATTTGGTATTTTTATGACAAGTGATCAATGAGTCACCACTCATTCAGTTATTTG 420 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 TCTTTTAACAAGTCAGTGTGTCATTCATCTTATTTAGGTCAACTGTTATTATCTTCCGAA 480 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 TTCCCCACGTTTTGTTTAGAAATATCATTATACACCATCTTCATTGGTGTTCTCTCATCT 540 consensus_8533#1 ---------------------ATATCATTATACACCATCTTCATGGGTGTTCTCTCATCT 39 *********************** *************** consensus_8533#0 TCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATAC 600 consensus_8533#1 TCTATTGGAATTCCTGCTTGTGAAGCTCTTCACTTTTGAAAAGGCAAATGTTTCATATAC 99 ************************************************************ consensus_8533#0 CTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTNTGGTAAGTATT 660 consensus_8533#1 CTTCCGCTGCACTAACAAATGTGGGACACGGAACAATTAGAGCAGATTTTGGCTGAGAAA 159 ************************************************ *** * consensus_8533#0 TCTCGTGTTGTGATGACTTCGTAGGTGCCATATGAAGCTTCAATCTCTGATTGGAAGCTA 720 consensus_8533#1 CCGTGAACTACCGTTTCGTTTGAAAGACTATCC----TTACGAATTGCGCATGTA---CT 212 * * * * * * * * ** * * * * * ** * consensus_8533#0 CTGTTATTATTTTAATCTGAATGAAACAAAAGCTTCTTTCTTTNTTCTAGGCTGAGAAAC 780 consensus_8533#1 CTATGACNNTTTCCATATAAAATATATATG------------------------------ 242 ** * * *** ** * ** * * * consensus_8533#0 GTGAACTACCCGTTTCGTTGAAGACTATNCTTACGAATGCGCATGTACTCTATGACATTT 840 consensus_8533#1 ------------------------------------------------------------ consensus_8533#0 NCATATAAA 849 consensus_8533#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||