These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 617 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGG-------GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC-TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAATTGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAAATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG] [+] EMBL CD080009 [CTCGAGGCCAAAAATTCGGCACGAGG GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTGTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTAACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAATTGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAAATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG] [+] EMBL CD077755 [ gAATTCGTCACGAGGCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGCTTGC TTATATTCATTTCAAGCACAGGaa ] [+] EMBL CD077558 [ GAGGA GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATAC ] [+] EMBL CD083521 [ gTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCA GGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATNAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCG ] consensusID : consensus_8544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 314 fasta sequence [TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGAAATG] [+] EMBL CD197958 [TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGAAATG] [+] EMBL CD185950 [ GGCGGTCGAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCTAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGtatg ] consensusID : consensus_8544#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [TGGCGGTCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATG] [+] EMBL CD185940 [TGGCGGTCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8544#1 TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAG 60 consensus_8544#2 TGGCGGTCGAACTAGTTCCCGACGCTCC-------------------------------- 28 consensus_8544#0 -----------CTCGAGGCCAAAAATTCGGCA-------CGAGGGTTCCCGACGCTCC-- 40 ** * ** * * * consensus_8544#1 ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 120 consensus_8544#2 ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 88 consensus_8544#0 ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 100 ************************************************************ consensus_8544#1 TGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 180 consensus_8544#2 TGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 148 consensus_8544#0 TGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 160 *********************** ************************************ consensus_8544#1 GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 240 consensus_8544#2 GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 208 consensus_8544#0 GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 220 ************************************************************ consensus_8544#1 TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 300 consensus_8544#2 TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 268 consensus_8544#0 TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 280 ************************************************************ consensus_8544#1 CAGTACTCGAAATG---------------------------------------------- 314 consensus_8544#2 CAGTACTCGTA-TG---------------------------------------------- 281 consensus_8544#0 CAGTACTCGTA-TGAGGCAGCCAGCCCAGAAGGCTACTTATGCTGCTTTATATTCATTTC 339 ********* * ** consensus_8544#1 ------------------------------------------------------------ consensus_8544#2 ------------------------------------------------------------ consensus_8544#0 AAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTT 399 consensus_8544#1 ------------------------------------------------------------ consensus_8544#2 ------------------------------------------------------------ consensus_8544#0 TCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATC 459 consensus_8544#1 ------------------------------------------------------------ consensus_8544#2 ------------------------------------------------------------ consensus_8544#0 AGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAAT 519 consensus_8544#1 ------------------------------------------------------------ consensus_8544#2 ------------------------------------------------------------ consensus_8544#0 TGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAA 579 consensus_8544#1 -------------------------------------- consensus_8544#2 -------------------------------------- consensus_8544#0 ATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG 617 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||