These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 939 fasta sequence [TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACCTTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTCTTAGTATGATTTGATTGCTTTGTGGAAGGTATATTTCGTGTAGTATCGTTTGTATCACCAAGTAAACTAATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA] [+] EMBL CD114270 [TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACCTTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTCTTAGTATGATTTGATTGCTTTGTGGAAGGTATATTTCGTGTAGTATCGTTTGTATCACCAAGTAAACTAATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACNAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTG AAATTCGTCTG AATACACTCTGAAGA GTGTATGATTTGC AGCAGTTAAATAAGC TGTAGT ] [+] EMBL CD128036 [ GTAGTATCGTTTGTATCACCAAGTAAACTAATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT ] [-] EMBL CD098157 [ CCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA] [-] EMBL CD097771 [ CCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGTATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA] consensusID : consensus_8564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA] [-] EMBL CD089282 [GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA] [-] EMBL CD089283 [ ATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA] consensusID : consensus_8564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [NAAGAGCAAATAGTAGGTATATTTCGTGTTTTTTCGTTTGTATCACCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT] [+] EMBL CD127942 [NAAGAGCAAATAGTAGGTATATTTCGTGTTTTTTCGTTTGTATCACCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8564#0 TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAAT 60 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 GGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCT 120 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 TTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGT 180 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 GAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACC 240 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 TTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTC 300 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 TTAGTATGATTTGATTGCTTTGTGGAAGGTATA---TTTCGTGTAGTATCGTTTGTATCA 357 consensus_8564#2 ------------NAAGAGCAAATAGTAGGTATA---TTTCGTGTTTTTTCGTTTGTATCA 45 consensus_8564#1 ------------GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAA 48 * * * ** * *** * * * * consensus_8564#0 CCAAGTAAACTA-ATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACG 416 consensus_8564#2 CCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACG 105 consensus_8564#1 TTATAGAAGTTA--AACAATCAAATAGAAATGCTCGTCC--AATTATTACATCAATAAAT 104 * ** ** **** * * * * * * ** * * ** ** * consensus_8564#0 AACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAA--TGAAAAATTG-GTC 473 consensus_8564#2 AACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAA--TGAAAAATTG-GTC 162 consensus_8564#1 GGTGGAGAAAATGAT--GATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTT 162 *** **** ** *** *** * * ** ** ** * * ** consensus_8564#0 CACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTA---GTAAGTATTCCACTACA 530 consensus_8564#2 CACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTA---GTAAGTATTCCACTACA 219 consensus_8564#1 CTTTTTTTGTTGAACTT--TCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGA 220 * ** ** ****** * * ** *** ** * * * * ** * * consensus_8564#0 AACTTTAGATTCCATATTGACGGAT----GTTTTACTGGACGA--TGTATCCCATGGTTG 584 consensus_8564#2 AACTTTAGATTCCATATTGACGGAT----GTTTTACTGGACGA--TGTATCCCATGGTTG 273 consensus_8564#1 TAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATG 280 * * * * ** * * *** *** * ** * ***** *** ** consensus_8564#0 GATCC--AAAATATATTGAT-TGAATCTTTATGAGAATCTAATGTATTTACTTCTAAT-- 639 consensus_8564#2 GATCC--AAAATATATTGAT-TGAATCTTTATGAGAATCTAATGTATTTACTTCTAAT-- 328 consensus_8564#1 TACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATT 340 * * ****** * ** *** *** * * ** *** * * ** consensus_8564#0 -AAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGA 698 consensus_8564#2 -AAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGA 387 consensus_8564#1 AGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAA 400 ** ** ** * * ** **** * * * *** * ** * * consensus_8564#0 A-ATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATA-AGCATGTAGTAATTTC 756 consensus_8564#2 A-ATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATA-AGCATGTAGTAATTTC 445 consensus_8564#1 ACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTT 460 * ***** * * * * * ** * * * ** ** ** ** *** consensus_8564#0 GGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCG 816 consensus_8564#2 GGTGTAGCTCCTGCTTCATCTAAATATT-------------------------------- 473 consensus_8564#1 T-TATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATAT 519 * * * ** ** * * *** consensus_8564#0 ATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGC 876 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 TGAAAATAATGAA----------------------------------------------- 532 consensus_8564#0 ACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACA 936 consensus_8564#2 ------------------------------------------------------------ consensus_8564#1 ------------------------------------------------------------ consensus_8564#0 AAA 939 consensus_8564#2 --- consensus_8564#1 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||