These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 800 fasta sequence [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACC-AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA] [+] EMBL CD123466 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACC AATA GCGGGATCGACACT ] [+] EMBL CD123475 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACCAAATAGGCGGGAT ] [+] EMBL CD123470 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAGCAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAAT ] [-] EMBL CD123506 [ CTAGGTGATCGATAAATAAATNTATTTCA TCCCTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCCACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTTTGATTGTTAAATTGGTACC AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA] [-] EMBL CD123527 [ CATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTTTGATTGTTAAATTGGTACC AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAGACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA] consensusID : consensus_8571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence [ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAAAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCG] [+] EMBL CD073473 [ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAAAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTC ] [-] EMBL CD079022 [ TGTACTNTATTNTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAGAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8571#0 ---CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTT-TGTTTTACTGATAGTTCAAA 56 consensus_8571#1 ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAA- 59 * * ** * * ** ** * * * ** * * * * ** consensus_8571#0 CCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAA-ATGGGACACAGACTACAAGCA 115 consensus_8571#1 -CTAAAT-GTTCTATTATTGCACACAACATAAAATGAACACGTTATA-AAAGCACAAATA 116 ** ** **** ** * * * ** * * ** * * * * * * **** * consensus_8571#0 AT-GGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAG 174 consensus_8571#1 TTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAG--GGTTTGA 174 * * *** ** * * * * ** * * ** ** *** ** * consensus_8571#0 GTGATCGATAAATA--AATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCA 232 consensus_8571#1 TGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGA 234 * ** * * * * * ** * * * ** **** * ** * consensus_8571#0 TCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTC 292 consensus_8571#1 TGCACACTGGAT-TTTGTAGAT-TTGAAACG-CTGACGTAGCCAATGGTAGTCAGTACGA 291 * * ** * ** *** * ****** * ** * ** * * * consensus_8571#0 TGTTGGTGATGTACAAATGT--ATTTTTCGCAATGAGGCACATCATAGTATGCAACAATT 350 consensus_8571#1 TGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAAC-CTTCTGGGTATGTAAAGAAT 350 ***** * *** *** * * * ** * * ** ***** ** * * consensus_8571#0 AAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCA--TAAAACTGTATATTGTTCAAGT 408 consensus_8571#1 --GTTGTAGGTAGCGTTA----AAGATATATGTCCAATCGAAGCACTATATTCATCA-GT 403 *** * ** *** * ** * * **** ** * ****** *** ** consensus_8571#0 ACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGA 468 consensus_8571#1 AGTGAATGTG------AACACGTAGTCACCAAT-GGTCTACTTATAAAGTAGTTCACAGA 456 * * * * *************** ******************** ***** consensus_8571#0 ATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATC 528 consensus_8571#1 ATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATC 516 ************************************************************ consensus_8571#0 ATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGT 588 consensus_8571#1 ATATTGAATCGGACAGTTCG---------------------------------------- 536 ******************** consensus_8571#0 CAACAATGCTTCCATTNTGATTGTTAAATTGGTACCAATAGGCGGGATCGACACTCCAGA 648 consensus_8571#1 ------------------------------------------------------------ consensus_8571#0 AAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGA 708 consensus_8571#1 ------------------------------------------------------------ consensus_8571#0 GGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAAC 768 consensus_8571#1 ------------------------------------------------------------ consensus_8571#0 AAGAATGGATTAAAGGCTAGAGTTCTCAGAAA 800 consensus_8571#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||