These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1186 fasta sequence [ACGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT-GGGAAAAGATTCAA-TGCCCAATTCT-GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTATGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTGTTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAGTCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGTTTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGGCTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAACTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCTTTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACTTTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT] [+] EMBL CD079038 [ CGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT GGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGnt ] [+] EMBL CD083747 [agGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTT GGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATG ] [+] EMBL AI977428 [ GACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTGATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTATCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTGCTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACTAGCACATTTCTGTTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACATAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACATAACAGTTACCTTTACTTACTGTT GNGAAAAGATTCAA TGCCCAATTCT ] [+] EMBL BF440121 [ atccgTCACCAGAATGTTT TAAGAGTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTTTGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTTACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTCGTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTG GGGAAAAGATTCAATTGCCCAATTCTGGTGATATATGCTTTCTTTTAAAGCC ] [-] EMBL CD142238 [ TTACAAAACAGTTACCTTTAC TACTGTTNGGGAAAAGATTCAA TGCCCAATTCT GTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTATGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGT ] [-] EMBL CD073490 [ GTTTTCTGTATTGTGNACTATGTTTTCTATTTGCTTTATCCTACTTGCTAAAATACCTAAAGATTCGAACTACTAGTGTTGCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTGTTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAGTCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGTTTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGGCTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAACTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCTTTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACTTTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT] consensusID : consensus_8579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GAATTCGGCACGAGGGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAATGCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC] [+] EMBL CD077505 [GAATTCGGCACGAGGGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAATGCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGTTGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGTTACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8579#0 ACGGGAACTGTCTGACGCATCCGTCACCAGAATGTTTTAAGAGATATTTGTGACAATGTG 60 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 ATGAATGGAAATCAAATGAAATACATCTATCTTCCAGATGTGTATTCTAAACACCGTTTA 120 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TCAATATGTGTGCAAGAATTAAGCAAATTCTGTTCAGCGATTCCAGCTGCACTTATTTTG 180 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 CTGATTATAAGCTGGTCATACTATGTAGTTACTTTTGTTGTAATCCAAGATTTAATCACT 240 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 AGCACATTTCTATTGTTATTTTTCTTCGCTCCATACCACGTTTTGTTCATCCTATTTCTT 300 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TGGTCATTTTGGAAGTCAACATATACCCAGATAACTACAATACCGAAAAACTTTTATCTT 360 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 ACTGCCAATGAAACAAAATGTTTTATAGAGCTGGAAAATGATCACGATCGGTCAGAATTC 420 consensus_8579#1 ------------------------------------------------------GAATTC 6 ****** consensus_8579#0 GTGAATAATTTGTCCGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAAT 480 consensus_8579#1 GGCACGAG------GGTTACAAAACAGTTACCTTTACTTACTGTTGGGAAAAGATTCAAT 60 * * * ********************************************* consensus_8579#0 GCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGT 540 consensus_8579#1 GCCCAATTCTGTGATATATGCTTTCTTTTAAAGCCAGATCGTACACATCATTGTTCAAGT 120 ************************************************************ consensus_8579#0 TGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGT 600 consensus_8579#1 TGTATGAGATGTGTTCCGAAAATGGATCATCATTGTCCTTGGATAAATAACTGTGTTGGT 180 ************************************************************ consensus_8579#0 TACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGTTTTCTGTATTGTGTACTA 660 consensus_8579#1 TACCATAATTATAAATATTTCATGTTACTTATCTTCTACGGNTTTC-------------- 226 ***************************************** **** consensus_8579#0 TGTTTTCTATTTGCTTTATCCTACATGCTAAAATACCTAAAGATTCGAACTACTAGTGTT 720 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 GCTAATAATCGATCGTGGGATTTGTTTTGTGCATTTACTCTGTCGCTTTTATCGGCTGTG 780 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TTTGCAATGGCACTGTTAATCCTGCTCCTATTCCATACGTATTTAGTATTTAAAAATAAG 840 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TCTACGCTAGAATATTTTCGGCCCCCGAATTTTCGTGGTAACAGTCATCGTATATACGGT 900 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TTTAATCTTGGGTGGAAGAATAATTTTCTTCAAATATTTGGTAATAACATCAAGCATTGG 960 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 CTGTTCCTGTATTTTTTAGTGAAGGAGATGGAGTCTCTTTCCAAATCCGAGAAATTCCAA 1020 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 CTCATGAAGACTACTCCCTGTTGCTGTCGACTATTTAGTATTGACGAATGAGATCTATCT 1080 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TTGTCACTTACATGTGTTCATACAATTCTGGCTGGATTTGTGATAATTTTCAAAAAAACT 1140 consensus_8579#1 ------------------------------------------------------------ consensus_8579#0 TTTGTCTACCTGTCATGTCAACTAGTTTTTCAAATAAATTAAATAT 1186 consensus_8579#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||