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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 799 fasta sequence
[ATATCCGTTTAGAGAGTCACGAATAAAACTTTGACAACAGAAATGAGACTTGGATTAAACTATTTAGAGCACGATGGTTGCCCTATGAAAAAATTCAGAGAACAATTACTTTACAAAC-GGTACTGGGAAATGTGAAATACAAAGTCCCGGAATAGTTT-TTCAGTCGCGTCTCAATGGGTAAGAGACTTCACTCAACCCATCTTTAGTGATTGTGCAGATTATAACACTATCCCCACATTGTATGTCTCTTTCTGCAGCGCTGATAAATATATCATGAGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGGGACCCAATTTGAACAATCGAGGAGAGTTTCTAGAGAGAATAACAAAATCACCATCGCATAGACGAGTGTCAGAAGCTATGAGGGAGAAATCATTTCCAGCAATTCCCATAACAGTCCCTCCATAAGACGAATAAGGGTTAAACATG]
[+] EMBL CD076984 [ATATCCGTTTAGAGAGTCACGAATAAAACTTTGACAACAGAAATGAGACTTGGATTAAACTATTTAGAGCACGATGGTTGCCCTATGAAAAAATTCAGAGAACAATTACTTTACAAACGGGTACTGGGAAATGTGAAATACAAAGTCCCGGAATAGTTTNTTCAGTCGCGTCTCAATGGGTAAGAGACTTCACTCAACCCATCTTTAGTGATTGTGCAGATTATAACACTATCCCCACATTGTATGTCTCTTTCTGCAGCGCTGATAAATATATCATGGGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGA ]
[+] EMBL CD077334 [ATATCTGTTTAGAGAGTCACGAATAAAACTTTGACAACAGAAATGAGACTTGGATTAAACTATTTAGAGCACGATGGTTGCCCTATGAAAAAATTCAGAGAACAATTACTTTACAAAC GGTACTGGGAAATGTGAAATACAAAGTCCCGGAATAGTTT TTCAGTCGCGTCTCAATGGGTAAGAGACTTCACTCAACCCATCTTTAGTGATTGTGCAGATTATAACACTATCCCCACATTGTATGTCTCTTTCTGCAGCGCTGATAAATATATCATGGGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTCTTTTTCTAACAATTTGGTCAATGTCAAA ]
[-] EMBL AI977600 [ TATTTAGAGCACGATGGTTGCCCTATGAAAAAATTCAGAGAACAATTACTTTACAAAC GGTACT GGAAATGTGAAATACAAAGTCCCGGAATAGTTT TTCAGTCGCGTCTCAATGGGTAAGAGACTTCACTCAACCCATCTTTAGTGATTGTGCAGATTATAACACTATCCCCACATTGTATGTCTCTTTCTGCAGCGCTGATAAATATATCATGAGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAA ]
[-] EMBL CD082839 [ AGATTATAACACTATCCCCACATGNTATGTCTCTTTCTGCAGCGCTGATAAATATATCATGAGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGGGACCCAATTTGAACAATCGAGGAGAGTTTCTAGAGAGAATAACAAAATCACCATCGCATAGACGAGTGTCAGAAGCTATGAGGGAGAAATCATTTCCAGCAATTCCCATAACAGTCCCTCCATA ]
[-] EMBL AI975848 [ CTCTTTCTGCAGCGCTGATAAATATATCATGAGTAAGTTTAACCGCTGTTTCCTTGTCCAAACGTGACAC TGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACGGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGGGACCCAATTTGAACAATCGAGGAGAGTTTCTAGAGAGAATAACAAAATCACCATCGCATAGACGAGTGTCAGAAGCTATGAGGGAGAAATCATTTCCAGCAATTCCCATAACAGTCCCTCCATTAGACGAATAAGGGTTAAACATG]
[+] EMBL CD119475 [ TTCGTGGAAGTGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTGGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGGGACCCAATTTGAACAATCGAGGAGAGTTTCTAGAGAGAATAACAAAAT ]
consensusID : consensus_8583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[TAAATATGGTATTGTGATCGATGGGGTATCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGA]
[+] EMBL BG931579 [TAAATATGGTATTGTGATCGATGGGGTATCCTTGTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGGTTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTACAGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTACATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTTCGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTTGGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8583#0 ATATCCGTTTAGAGAGTCACGAATAAAACTTTGACAACAGAAATGAGACTTGGATTAAAC 60
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 TATTTAGAGCACGATGGTTGCCCTATGAAAAAATTCAGAGAACAATTACTTTACAAACGG 120
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 TACTGGGAAATGTGAAATACAAAGTCCCGGAATAGTTTTTCAGTCGCGTCTCAATGGGTA 180
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 AGAGACTTCACTCAACCCATCTTTAGTGATTGTGCAGATTATAACACTATCCCCACATTG 240
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 TATGTCTCTTTCTGCAGCGCTGATAAATATATCATGAGTAAGTTTAACCGCTGTTTCCTT 300
consensus_8583#1 -----------------------TAAATATGGTAT---TGTGATCGAT-GGGGTATCCTT 33
******* ** * * * * * ** *****
consensus_8583#0 GTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGG 360
consensus_8583#1 GTCCAAACGTGACACGTGGTATTTCGAGGTCTTATTGCCAACCGTGCTATCCAGAAACGG 93
************************************************************
consensus_8583#0 TTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTAC 420
consensus_8583#1 TTGCAGAATTGCCGAAGAACTACCGGAGGCCCGGTACCCTTCAGATTCATATGATCCTAC 153
************************************************************
consensus_8583#0 AGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTAC 480
consensus_8583#1 AGGATCATAACTGTATAGCACACCACGGCCTTCATCCAGACCTACTAGTACATTGCTTAC 213
************************************************************
consensus_8583#0 ATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTT 540
consensus_8583#1 ATAAAATGGGAAGAACCGTCTGTTATAAAGAGTCACAGACAAAAGACCGGCTAGTGCTTT 273
************************************************************
consensus_8583#0 CGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTT 600
consensus_8583#1 CGTCGAAATGTTTTTTCCATGGTCATAACGAAACGTTTTCACTTTATTTTCTAACAATTT 333
************************************************************
consensus_8583#0 GGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGGGACCCAA 660
consensus_8583#1 GGTCAATGTCAAAACATCCCCGTGAAATCCGGCGCACCCTAGTATATTACCGA------- 386
****************************************************
consensus_8583#0 TTTGAACAATCGAGGAGAGTTTCTAGAGAGAATAACAAAATCACCATCGCATAGACGAGT 720
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 GTCAGAAGCTATGAGGGAGAAATCATTTCCAGCAATTCCCATAACAGTCCCTCCATAAGA 780
consensus_8583#1 ------------------------------------------------------------
consensus_8583#0 CGAATAAGGGTTAAACATG 799
consensus_8583#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||