These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence [ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGCACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATATAAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAAATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCAGAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACCAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATTCACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC] [+] EMBL CD073900 [ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGCACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATATAAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAAATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCAGAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACCAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGG ] [-] EMBL CD079638 [ AAAACAACAATTCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATTCACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC] consensusID : consensus_8586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 981 fasta sequence [TAATATAAATAGGATGTTGATCCCTTGAAAGAATTAATAAGCCGAGATTTGATTGTCAATAAAGTATAAGTAAACAGATAAACCTTTTTTTTTATAATATTATATATGGAATAAAAGCATCAGTATGTTCGTCTTAAAGTTTAACATAAATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCAGANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAACAAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTGGACCCTCGGCCGAATTNTTGGCCTGGAGG] [-] EMBL CD080199 [TAATATAAATAGGATGTTGATCCCTTGAAAGAATTAATAAGCCGAGATTTGATTGTCAATAAAGTATAAGTAAACAGATAAACCTTTTTTTTTATAATATTATATATGGAATAAAAGCATCAGTATGTTCGTCTTAAAGTTTAACATAAATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCAGANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAACAAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTGGACCCTCGGCCGAATTNTTGGCCTGGAGG] consensusID : consensus_8586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 737 fasta sequence [GAACTAGAAAAAAACAGTAGTAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG-TTCACCCA-GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT-ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC-GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCATTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGGCCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTTTGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC] [+] EMBL CD196426 [GAACTAGAAAAAAACAGTAGTAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACAT TTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTAC ] [+] EMBL CD140719 [ CTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATT ] [+] EMBL CD140880 [ CTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAGTAGACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCCCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAG ] [-] EMBL BF936660 [ TTCATAACTCGTTTCACCCAGGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATAATCCCATTCACGCCATATCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTCGGAG AGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCATTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGGCCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTTTGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8586#0 ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGC 60 consensus_8586#1 ---------------TAATATAAATAGGATGTTGATCCCTTGAAA-GAAT-TAATAAGCC 43 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 ACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATAT 120 consensus_8586#1 ----GAGATTTGATTGTCAAT--AAAGTAT-AAGT-AAACAGATAAACCTTTTTTTTTAT 95 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 AAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAA 180 consensus_8586#1 AA-TAT---TATATATGGAA-TAAAAGCATCAGTAT-GTTCGTCTTAAAGTTTAACATAA 149 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 ATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGA 240 consensus_8586#1 ATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGA 209 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 TACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCA 300 consensus_8586#1 TACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCA 269 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 GAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACC 360 consensus_8586#1 GANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAAC 329 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 AAA-TCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACC-TATCAATAA 418 consensus_8586#1 AAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAA 389 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 ACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGA 478 consensus_8586#1 ACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGA 449 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 CAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGGAAAAGAAA 538 consensus_8586#1 CAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAA 509 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 TAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACG 598 consensus_8586#1 TAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACG 569 consensus_8586#2 ------------------------------------------------------------ consensus_8586#0 ACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAA 658 consensus_8586#1 ACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAA 629 consensus_8586#2 -----------------------GAACTAGAAAAAAACAGTAGTAGCAGCAGC---GAAA 34 ****************************** **** consensus_8586#0 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 718 consensus_8586#1 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 689 consensus_8586#2 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 94 ************************************************************ consensus_8586#0 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 778 consensus_8586#1 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 749 consensus_8586#2 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 154 ************************************************************ consensus_8586#0 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 838 consensus_8586#1 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 809 consensus_8586#2 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 214 ************************************************************ consensus_8586#0 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 898 consensus_8586#1 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 869 consensus_8586#2 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 274 ************************************************************ consensus_8586#0 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 958 consensus_8586#1 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 929 consensus_8586#2 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 334 ************************************************************ consensus_8586#0 CTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATT 1018 consensus_8586#1 CTCGTTCACCCAGGCCTAATGT-GGACC-CTCGGCCGAATTNTTGGCCTGGAGG------ 981 consensus_8586#2 CTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATT 394 ********************** ***** * * * *** ** * consensus_8586#0 CACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC-------------------------- 1052 consensus_8586#1 ------------------------------------------------------------ consensus_8586#2 CACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTCGAGCAGCTTCTT 454 consensus_8586#0 ------------------------------------------------------------ consensus_8586#1 ------------------------------------------------------------ consensus_8586#2 GTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAG 514 consensus_8586#0 ------------------------------------------------------------ consensus_8586#1 ------------------------------------------------------------ consensus_8586#2 ATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCA 574 consensus_8586#0 ------------------------------------------------------------ consensus_8586#1 ------------------------------------------------------------ consensus_8586#2 TTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGG 634 consensus_8586#0 ------------------------------------------------------------ consensus_8586#1 ------------------------------------------------------------ consensus_8586#2 CCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTT 694 consensus_8586#0 ------------------------------------------- consensus_8586#1 ------------------------------------------- consensus_8586#2 TGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC 737 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||