These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 764 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAACCATANA] [+] EMBL CD081065 [CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTNTGCTTTTCCATCTTCTGTGTTTTTAGTTNTTCTTCCACTTTTTTTATTCAAACTTTNTGTATTAAATGCCTTGAAGTGGATAAAAGAATCTACATANTACCATAN ] [-] EMBL CD074887 [ CGACCAAGAGATTTTTCTAC TTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAACCATAaa] [-] EMBL CD136888 [ TTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATTACTAAC ] [-] EMBL CD077301 [ TTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTGCATATAACCAT ] [-] EMBL CD134886 [ CCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTC ] consensusID : consensus_8625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CACGAGGAGACAAGACATCCTGATGTGAATGCTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGTTTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGTTATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAGACGTATTTACTATTTAATTCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG] [+] EMBL CD083483 [CACGAGGAGACAAGACATCCTGATGTGAATGCTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGTTTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGTTATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAGACGTATTTACTATTTAATTCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG] consensusID : consensus_8625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [CCGCTGGTTCTCGTGCACTAATTCANCCCCTGTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNATCTTCAAATATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATCTCTCGAAACGTCCAAGAAATCAGATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA] [-] EMBL CD169591 [CCGCTGGTTCTCGTGCACTAATTCANCCCCTGTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNATCTTCAAATATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATCTCTCGAAACGTCCAAGAAATCAGATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8625#0 CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGC 60 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAAC 120 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACA 180 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 -----------------------------CACGAGGAGACAAGACATCCTGATGTGAATG 31 consensus_8625#0 CATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAG 240 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 CTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGT 91 consensus_8625#0 TATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAA 300 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 TTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGT 151 consensus_8625#0 CAACCACATGGGAAGTGACTCCCGC-TCGTTC--TCGTGCACTTAATCAACCCTG----- 352 consensus_8625#2 ---------------------CCGC-TGGTTC--TCGTGCACTAATTCANCCCCT----- 31 consensus_8625#1 TATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAG 211 * * ** * * * * * * * ** consensus_8625#0 TGTTTTATTGGATTTC-TATGATGCACATGATGTTTGGCACTTTTTA-----TCTTCAA- 405 consensus_8625#2 GTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNA----TCTTCAAA 87 consensus_8625#1 ACGTATTTACTATTTAAT-TCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAG 270 * * * **** * * * ** *** ** * ** * * * consensus_8625#0 TATCTATGTTCTTC-TCATTTATGTTAA-TAATGTACGTGGACGATGATC--TCTCGAAA 461 consensus_8625#2 TATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATC--TCTCGAAA 145 consensus_8625#1 AGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAA 330 **** * * * * ** * * ** * ** ** * * * ** consensus_8625#0 CGTCCAAGAAATCA---GATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTA 518 consensus_8625#2 CGTCCAAGAAATCA---GATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTA 202 consensus_8625#1 TAGTCAAACGACCAAGAGATTTTTCTACTTTT-TTATTGTCAATATTTATGATCAATTTA 389 *** * ** *** *** * *** * * * * * * ** ****** consensus_8625#0 TTGTT-CACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATT 577 consensus_8625#2 TTGTT-CACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA------- 254 consensus_8625#1 TTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATG 449 *** * *** ** * **** ** * * *** * * ** ****** consensus_8625#0 ATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAG 637 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 TTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG------------------- 490 consensus_8625#0 TGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACT 697 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAA 757 consensus_8625#2 ------------------------------------------------------------ consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CCATANA 764 consensus_8625#2 ------- consensus_8625#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||