These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA] [+] EMBL BG931882 [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA] consensusID : consensus_863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG] [+] EMBL BG932875 [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_863#0 TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 60 consensus_863#1 --TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 58 ********************************************************** consensus_863#0 ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 120 consensus_863#1 ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 118 ************************************************************ consensus_863#0 CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 180 consensus_863#1 CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 178 ************************************************************ consensus_863#0 AGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTA 240 consensus_863#1 AGTGACGGCAACGAGTAGGACGGTGGCCGTGGA-AGTCGGAAGCCGCTAAGGAGTGTGTA 237 ******************** *** ** **** ** ******* * * * * ** consensus_863#0 GGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTT 300 consensus_863#1 A-CAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG---------- 286 * ** * * * ** ** * * * ** ** consensus_863#0 GAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA 353 consensus_863#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||