Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 863 cluster # 863       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_863#0 length = 353 sequences # 1  
consensus_863#1 length = 286 sequences # 1  

consensusID : consensus_863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence
                              [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA]

[+] EMBL BG931882             [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA]


>consensus_863#0 TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG AGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTA GGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTT GAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA



consensusID : consensus_863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence
                              [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG]

[+] EMBL BG932875             [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG]


>consensus_863#1 TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCAC CTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACC GTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAG TGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACA ACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_863#0      TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 60
consensus_863#1      --TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 58
                       **********************************************************

consensus_863#0      ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 120
consensus_863#1      ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 118
                     ************************************************************

consensus_863#0      CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 180
consensus_863#1      CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 178
                     ************************************************************

consensus_863#0      AGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTA 240
consensus_863#1      AGTGACGGCAACGAGTAGGACGGTGGCCGTGGA-AGTCGGAAGCCGCTAAGGAGTGTGTA 237
                     ******************** *** ** ****  **  ******* *    * * *  **

consensus_863#0      GGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTT 300
consensus_863#1      A-CAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG---------- 286
                         *  ** *  * *   **        **  * * *       ** **          

consensus_863#0      GAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA 353
consensus_863#1      -----------------------------------------------------
                                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)