These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 473 fasta sequence [ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG-AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACGGTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGGTCGTCGTTTTTCTTGTGATTATTGTGAATACAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA] [+] EMBL CD119423 [ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGATTTATGTCGAAAGAAATTCATTACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACAC ] [+] EMBL CD119531 [ CTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCCAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACAC ] [-] EMBL CD119339 [ TGAAGATCAANCCGATAGACCAATATGCCAGCGCTGTTCANAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCAGAGCCAAGGTTCTGTTGTGAGATATGTCGAAAGAAATACAGAACTGATGTTCAGTACGCCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGAATAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGCCAACACATACCTCTGATAGACGGg ] [-] EMBL CD119455 [ TGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGNNATTCAGAAATGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAG AAAAAAGTCGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACGat ] [-] EMBL CD119322 [ TGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAAGTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAGCGTACATTTCTGTGTAAAG AAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACCACACA ] [+] EMBL CD182304 [ CTGTTCTAATCGTAATTCGGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACACCCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAGAAAAAAAGTTGTGGTAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAGACCTTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGGTCGTCGTTTTTCTTGTGATTATTGTGAATACAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA] consensusID : consensus_8646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA] [+] EMBL CD193783 [GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGCACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8646#0 ACCGTCTAGTTATGAATCTGAAGATCAAACCGATAGACCAATATGCCAGCGCTGTTCAAA 60 consensus_8646#1 ------------------------------------------------------------ consensus_8646#0 GTCATTTAAATCCCGCCTTACACTGAAACATCATACTGAAGTCTGTTCTAATCGTAATTC 120 consensus_8646#1 ------------------------------------------------------------ consensus_8646#0 GGAGCCAAGGTTCTGCTGTGAGATATGTCGAAAGAAATTCAGGACTGATATTCAGTACAC 180 consensus_8646#1 ------------------------------------------------------------ consensus_8646#0 CCGTCACATCTATTACACTCATTCACAACGTACATTTCTGTGTAAAGAAAAAAGTTGTGG 240 consensus_8646#1 ------------------------------------------------------------ consensus_8646#0 TAGAGCATTCTTATCAAACTCGCATCTTATAGCTCACATGACAACACATACCTCTGATAG 300 consensus_8646#1 ------------------------------------------------------------ consensus_8646#0 ACGGTATTCCTGTTCAGTACAAGGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGC 360 consensus_8646#1 ----------------------GGATGTTCATATCAAGCCCGTACAGCCGGTCGACTTGC 38 ************************************** consensus_8646#0 ACAACACAAAATTATTCATGGTCAAG---GTCGTCGTTTTTCTTGTGATTATTGTGAATA 417 consensus_8646#1 ACAACACAAAATTATTCATGGTCAAGCGTGATGTCACTCGTCTTTTGGGTA--------- 89 ************************** * *** * **** ** ** consensus_8646#0 CAGCGCGACCACATCTTCTAAATCTCGTCGGCATGCTCGTATACACGCTGGGGCTA 473 consensus_8646#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||