These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCTACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTT] [-] EMBL CD187484 [CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCTACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTT ] [+] EMBL CD115668 [ GTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGT ] [-] EMBL CD088625 [ aTCAATTTCAGCGNACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACAGCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGAGGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTT] consensusID : consensus_8648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 627 fasta sequence [CACGGCCCCTTATATTTCGAGGAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTANGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC] [+] EMBL CD060995 [CACGGCCCCTTATATTTCGAGGAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTANGTTCTCACG ] [-] EMBL CD060767 [ TGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTAGGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC] [+] EMBL CD191915 [ GGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACA ] [-] EMBL CD060800 [ CGTCG CAAACGAGTTACATT CCATTCCTTAGATTGT A TTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTT TCTCCCGAGCACGTTTAATAGGGAC CAACCTATGTGTCTGCGGTAACCAAAT TAAGTGCAGACTCACACATG GAAACCAAAATTAGCTTC GGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCAT TAGGTTAACAGTTACAT AAATAGTT AATCAACGT AC AAAATATAGCATGAGTTATTTGCCAAAc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8648#0 CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCT 60 consensus_8648#1 ------------------------------------------------------------ consensus_8648#0 ACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACT 120 consensus_8648#1 ------------------------------------------------------------ consensus_8648#0 ATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAA 180 consensus_8648#1 ------------------------------------------------------------ consensus_8648#0 CTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATAT 240 consensus_8648#1 ------------------------------CACGGCCCCTTATATTTCG-AGGAACATAT 29 * * ** * ** ** ******* consensus_8648#0 AGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCT 300 consensus_8648#1 AGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCT 89 ************************************************************ consensus_8648#0 CAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGT 360 consensus_8648#1 CAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGT 149 ************************************************************ consensus_8648#0 TTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCAC 420 consensus_8648#1 TTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCAC 209 ************************************************************ consensus_8648#0 AAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGA 480 consensus_8648#1 AAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGA 269 ************************************************************ consensus_8648#0 TTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGT 540 consensus_8648#1 TTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGT 329 ************************************************************ consensus_8648#0 TTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATG 600 consensus_8648#1 TTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATG 389 ************************************************************ consensus_8648#0 CGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATC 660 consensus_8648#1 CGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATC 449 ************************************************************ consensus_8648#0 AAATAACATGTCATCTAGGTT--------------------------------------- 681 consensus_8648#1 AAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAAT 509 ********************* consensus_8648#0 ------------------------------------------------------------ consensus_8648#1 ATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGG 569 consensus_8648#0 ---------------------------------------------------------- consensus_8648#1 GCATACATGAAGTANGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC 627 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||