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Schistosoma mansoni
cluster # 8661 cluster # 8661       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8661#0 length = 1021 sequences # 6  
consensus_8661#1 length = 170 sequences # 1  

consensusID : consensus_8661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1021
fasta sequence
                              [CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG]

[+] EMBL CD127663             [CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD128139             [                     GTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD127654             [                                                                                                                                                                                                             gctAAAACTTGCATAATGAAGATACCGACCTTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD095757             [                                                                                                                                                                                                                                                                                   CTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATA                                                                                                                                                         ]
[+] EMBL CD199538             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCAAATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAAT                                                                                                                                                          ]
[+] EMBL CD062525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cTTA TGCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG]


>consensus_8661#0 CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGT AGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGT CGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAAT CAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTA CTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACA TATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATA CCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCT GTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAAT GGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCT TCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGT TCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGT TTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGT GTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAA GCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACT GGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACA TCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTT CCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCT G



consensusID : consensus_8661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence
                              [TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA]

[+] EMBL CD061076             [TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA]


>consensus_8661#1 TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAG TTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGT TTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8661#0      CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGT 60
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      AGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGT 120
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      CGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAAT 180
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      CAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTA 240
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      CTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACA 300
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATA 360
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      CCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCT 420
consensus_8661#1      ----------------------------TTGCNCGCAGGGGAAACCATTCAGTTGCAGCT 32
                                                   **        *********************

consensus_8661#0      GTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTA-ATCTCATCTAA 479
consensus_8661#1      GTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAA 92
                      *************** ** ****************************  ***********

consensus_8661#0      TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 539
consensus_8661#1      TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 152
                      ************************************************************

consensus_8661#0      TTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGG 599
consensus_8661#1      TTCTACCGGTAACTGGGA------------------------------------------ 170
                      ******************                                          

consensus_8661#0      TTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCG 659
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGG 719
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCA 779
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      AGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCAC 839
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATAC 899
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      ATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGT 959
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTC 1019
consensus_8661#1      ------------------------------------------------------------
                                                                                  

consensus_8661#0      TG 1021
consensus_8661#1      --
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)