These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 889 fasta sequence [ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTTGAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATCCTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCAATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGTTCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCATGTGGGCGTCTCATTTCTAATCGATAATATGAAATTCTTTTTTGAACCTATTTACCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAACAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT] [+] EMBL CD093858 [ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTTGAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATCCTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCAATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAG ] [+] EMBL CD068096 [ ATAC GATGTCTCAAAATCCAATGGTC TGAAG TTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTG ] [-] EMBL CD127846 [ TTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGTTCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCATGTGGGCGTCTCATTTCTAATCGATAATATGAAATTCTTTTTTGAACCT ] [-] EMBL CD188727 [ TCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCATTTCATGTGGGCGTCTCATTTCTAATCGATAATCTGAAATTCTTTTTTGAGGCAATTTACCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAACAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT] consensusID : consensus_8666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [GGATCGAGATCCTCCTATAGTCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGTCTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATCAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATACCACGGACAGGCGCCACACCAA] [-] EMBL CD072337 [GGATCGAGATCCTCCTATAGTCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGTCTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATCAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATACCACGGACAGGCGCCACACCAA] consensusID : consensus_8666#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 163 fasta sequence [CTCTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTGTTGAGGCTAGAAGAAGAGGTCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCAATCC] [+] EMBL CD195281 [CTCTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTGTTGAGGCTAGAAGAAGAGGTCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCA ] [-] EMBL CD071687 [ ACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCAATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8666#0 ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTT 60 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 GAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAA 120 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 GAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAA 180 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 ACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCT 240 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 ATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGA 300 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 ATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATC 360 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 CTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCA 420 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 ATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAAT 480 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 AAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGT 540 consensus_8666#1 ------------------------------------------------------------ consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 TCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGT 600 consensus_8666#1 --------------------------------------------------------GGAT 4 consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 AATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCA 660 consensus_8666#1 CGAGATCC-TCCTATAG---TCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGT 60 consensus_8666#2 ------------------------------------------------------------ consensus_8666#0 TGTGGGCGTCTCATTTCTAATCGA-TAATATGAAATTCTTTTTTGAACCTATTT--ACCA 717 consensus_8666#1 CTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCA 120 consensus_8666#2 ----------------------------------------------------------CT 2 * consensus_8666#0 ATTAAC-GCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAAC 776 consensus_8666#1 ATTAAC-GCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATC 179 consensus_8666#2 CTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTG---TTGAGGCTAGAAGAAGAGG 59 ***** * * ******* * ** * *** ** ** * * * consensus_8666#0 AATCAATGGCTCAGC-TGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGC 835 consensus_8666#1 AATCAATGGCTCAGC-TGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGC 238 consensus_8666#2 TCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATAT 119 * ** ** * ** ** * *** * ** * ** * consensus_8666#0 T-TACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT----- 889 consensus_8666#1 T-TACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATA 297 consensus_8666#2 TGTATTTGGTCCTCAAACTG----GTGATTATAGTAGGATC--TCAATCC---------- 163 * ** * *** **** ** ** ***** * *** consensus_8666#0 ---------------------- consensus_8666#1 CCACGGACAGGCGCCACACCAA 319 consensus_8666#2 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||