These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 978 fasta sequence [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA] [+] EMBL CD118652 [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA ] [+] EMBL CD118576 [GTTCTGGATTGCAGTTAACTCCTATCTTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGCCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGCTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA ] [+] EMBL CD153089 [ ACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCAATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTA ] [+] EMBL CD185749 [ CATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA] [-] EMBL CD119158 [ CTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCT ] consensusID : consensus_8673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG] [+] EMBL CD169637 [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG] consensusID : consensus_8673#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA] [+] EMBL CD061251 [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8673#0 GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTT 60 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 ATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTG 120 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 TGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCAT 180 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 --------------------------------------------CACGATATTGCGCCAT 16 consensus_8673#0 CGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGG 240 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 TGCCTGCGTGGATAACTCTCATA-TCTGACATAGTTAGACTCCACTGATCACGGCTTCTC 75 consensus_8673#0 ACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATT 300 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAAT 135 consensus_8673#0 TAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTT 360 consensus_8673#2 -----------------------------------------------------------T 1 consensus_8673#1 TAGCTGTTCAGTGCTTTCTGGTTTTTA-----CTAGATGTTGAGTTTGGGTGTGTTCGTT 190 * consensus_8673#0 -TGGGAACGCTAAAT-GGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTA 418 consensus_8673#2 -TACAAACTTTAGGTTGGTTGAT-GAGGCTATTTACACTTCATCACAATGTAGATCAGTA 59 consensus_8673#1 ATGTTGATATGAAACTGGTTGTTAAAAGTGATTTAC---CTATTGTAAT-TGTTTTGATA 246 * * * *** * * ****** ** *** * * ** consensus_8673#0 TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 478 consensus_8673#2 TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 119 consensus_8673#1 CTGTGGGAG---AGCTTAGAAT---TATGTTCTATATTTCATTCTGTTGTTTCAACAGAC 300 * * ** *** ** **** * ** * * * ** * ** * consensus_8673#0 ACCACCTCGTCA---TTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGC 535 consensus_8673#2 ACCACCTCGTCA---TA------------------------------------------- 133 consensus_8673#1 AACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGT 360 * ** * * * consensus_8673#0 TATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGA 595 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 GATTGATTTCTCTTACCTTATATACAGTTTGT-TTAATTTTGTTTATTTAATACTTAGAG 419 consensus_8673#0 TGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTT 655 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 TAACAAAG---------------------------------------------------- 427 consensus_8673#0 AGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAAT 715 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 TGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAA 775 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 ATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNT 835 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 ATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTC 895 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 ANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCC 955 consensus_8673#2 ------------------------------------------------------------ consensus_8673#1 ------------------------------------------------------------ consensus_8673#0 ATCGTCTTTTTCAAGTATTCACA 978 consensus_8673#2 ----------------------- consensus_8673#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||