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Schistosoma mansoni
cluster # 8673 cluster # 8673       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8673#0 length = 978 sequences # 5  
consensus_8673#1 length = 427 sequences # 1  
consensus_8673#2 length = 133 sequences # 1  

consensusID : consensus_8673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 978
fasta sequence
                              [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA]

[+] EMBL CD118652             [GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD118576             [GTTCTGGATTGCAGTTAACTCCTATCTTCGTAAAGAACTATACGATTCCGTCGTCTGTTTATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTGTGTGCTTATCGCCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCATCGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGGACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGCTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD153089             [                                                                                                                                                                                                                                                                                         ACTGGGGCTGTATATCATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCAATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTA                                                                                                                                                                                                                                                         ]
[+] EMBL CD185749             [                                                                                                                                                                                                                                                                                                        CATTTAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGTCTTTTTCAAGTATTCACA]
[-] EMBL CD119158             [                                                                                                                                                                                                                                                                                                                                                         CTATGATTGGATGTTTGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCT                                                                                                                                                                                                               ]


>consensus_8673#0 GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTT ATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTG TGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCAT CGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGG ACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATT TAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTT TGGGAACGCTAAATGGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTATT TTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTAC CACCTCGTCATTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGCTATCA TGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGATGATG CTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTTAGCGA ACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAATTGAAG AAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCAC AGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNTATTCA TGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTCANAAC GTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCCATCGT CTTTTTCAAGTATTCACA



consensusID : consensus_8673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence
                              [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG]

[+] EMBL CD169637             [CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCACTGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGGTGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTTTTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGACAACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGTGATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGTAACAAAG]


>consensus_8673#1 CACGATATTGCGCCATTGCCTGCGTGGATAACTCTCATATCTGACATAGTTAGACTCCAC TGATCACGGCTTCTCATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATC ACATGATACAAGAATTAGCTGTTCAGTGCTTTCTGGTTTTTACTAGATGTTGAGTTTGGG TGTGTTCGTTATGTTGATATGAAACTGGTTGTTAAAAGTGATTTACCTATTGTAATTGTT TTGATACTGTGGGAGAGCTTAGAATTATGTTCTATATTTCATTCTGTTGTTTCAACAGAC AACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGT GATTGATTTCTCTTACCTTATATACAGTTTGTTTAATTTTGTTTATTTAATACTTAGAGT AACAAAG



consensusID : consensus_8673#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence
                              [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA]

[+] EMBL CD061251             [TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTATTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTACCACCTCGTCATA]


>consensus_8673#2 TTACAAACTTTAGGTTGGTTGATGAGGCTATTTACACTTCATCACAATGTAGATCAGTAT TTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACTA CCACCTCGTCATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8673#0      GTTCTGGATTGCAGTTAACTCCTATGGTCGTAAAGAACTATACGATTCCGTCGTCTGTTT 60
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATAACCAACACTCATGCAATATATTCGGGTTACATAACATACCAACTAATGCCGTTGTTG 120
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      TGTGCTTATCGTCGGAGCGTGGTAGACAGGGAAGCCTGCTTAGATTTTCATCTGTTTCAT 180
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      --------------------------------------------CACGATATTGCGCCAT 16
                                                                                  

consensus_8673#0      CGTCAAGTTGGGACGTTATCACAGTGAAAAGTACCTTTGCAAATATGGTTAAGCTAACGG 240
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      TGCCTGCGTGGATAACTCTCATA-TCTGACATAGTTAGACTCCACTGATCACGGCTTCTC 75
                                                                                  

consensus_8673#0      ACAATGATTTTCTGTTAACCTCTTCATCGTTGGAGCCCACCACTGGGGCTGTATATCATT 300
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ATTAGAACTTCAGGAATCGCATCTTGAAGCTAGTGACTAGTGATCACATGATACAAGAAT 135
                                                                                  

consensus_8673#0      TAGATTCCTCTGGTATTCCAGTTTTAAAATATTTTGTCAATAATTCTATGATTGGATGTT 360
consensus_8673#2      -----------------------------------------------------------T 1
consensus_8673#1      TAGCTGTTCAGTGCTTTCTGGTTTTTA-----CTAGATGTTGAGTTTGGGTGTGTTCGTT 190
                                                                                 *

consensus_8673#0      -TGGGAACGCTAAAT-GGTCGATCGTATTTATTTACACTTCATCACAATGTAGATCAGTA 418
consensus_8673#2      -TACAAACTTTAGGTTGGTTGAT-GAGGCTATTTACACTTCATCACAATGTAGATCAGTA 59
consensus_8673#1      ATGTTGATATGAAACTGGTTGTTAAAAGTGATTTAC---CTATTGTAAT-TGTTTTGATA 246
                       *    *    *    *** * *       ******     **   *** *   *   **

consensus_8673#0      TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 478
consensus_8673#2      TTTTAAGAATCTGGCTCTAAACATCTATGATTTAGAATCTGGTGAATTATCCAAAGAACT 119
consensus_8673#1      CTGTGGGAG---AGCTTAGAAT---TATGTTCTATATTTCATTCTGTTGTTTCAACAGAC 300
                       * *  **     ***   **    **** * ** * *    *   ** *   ** *   

consensus_8673#0      ACCACCTCGTCA---TTTCACTCTTGCTAGTCATCATGGTACAATTGAATCGATATCTGC 535
consensus_8673#2      ACCACCTCGTCA---TA------------------------------------------- 133
consensus_8673#1      AACATTCTGGAAATGTTTATTCAACGCTTAAAATCACAGATGGCTTAATTAGTTGTAAGT 360
                      * **    *  *   *                                            

consensus_8673#0      TATCATGTTTACTGATGCTACCGGTGCTCCGAGTTTCCGATTATTGCTATATACAGAGGA 595
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      GATTGATTTCTCTTACCTTATATACAGTTTGT-TTAATTTTGTTTATTTAATACTTAGAG 419
                                                                                  

consensus_8673#0      TGATGCTGTACAACTAATCCGACAAAATGGTAAACAACAATGGATTCGTGAAGAGGCGTT 655
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      TAACAAAG---------------------------------------------------- 427
                                                                                  

consensus_8673#0      AGCGAACATAGTTGCTGTTGAGGTAATCGATTTACCTGTTTCAGAGTTTCAAGCGAAAAT 715
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      TGAAGAAGAGTTTAATCATGCAAGCAACAACATTCTGGAAATGTTTATTCAACGCTTAAA 775
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATCACAGATGTCTCAATTAGTTGTATGGACGAAGCATTGGATNTATAACATACCANATNT 835
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATTCATGGCTATTGTATCGTCTAAACCGTTTTTCAAGCATTCATCTAATGGTGATCTGTC 895
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ANAACGTAGAGTACTACCATCATCATCTCCTTCTTTACAGGACTATTNCATCAGTGATCC 955
consensus_8673#2      ------------------------------------------------------------
consensus_8673#1      ------------------------------------------------------------
                                                                                  

consensus_8673#0      ATCGTCTTTTTCAAGTATTCACA 978
consensus_8673#2      -----------------------
consensus_8673#1      -----------------------
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)