These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG-AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATACCAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANATTT] [+] EMBL CD080097 [CTCGAGGCCAAAAATTCGGCACGAGGAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAACTATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATACCAAACCAAT AGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANAT ] [-] EMBL CD075856 [ AGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATA CAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCTAATT GTATGTGTTTGGTTTATTTTTAAAAAAAATT] [-] EMBL CD076116 [ ACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATA CAAACCAATAAGAGATGAGTTCTCAGGGTCAGAAAGTGGAACGTTTTTGGT ATATGGTct ] [+] EMBL SMAA69054 [ AAATGATGCTGATGAAGAAGAAATTACT AAAAGCTTGCTGCAGAAATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATACTGTTGATTCGTTTNNCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATAC AACCAATAAGAGATGAGTTCTCAGGGTCA ] consensusID : consensus_8675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGATTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGAAGAACACGANNATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT] [+] EMBL CD082521 [CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGATTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGAAGAACACGANNATGATGC ] [+] EMBL CD082247 [ agacaTCTGGGGTTACACAATGGGTTTTTGTGATTGATTGTACCGGCATGACCACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT] consensusID : consensus_8675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [TAATGATCAGCCATTATTCAGGCACATTCGTAACCAAAACGAGGATGACAGCTGGTTGTAGTCATGCCGGTACAATCGATCACAAAAACCCATTGTGTAACCCCAGACTTCATACTTTTGATTGCATTTTCAGTTGTATATATCAAATGAGTTATTGCATCGTTTGACATATTGCTATTTGAAATAGCTTGAGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT] [+] EMBL CD068155 [TAATGATCAGCCATTATTCAGGCACATTCGTAACCAAAACGAGGATGACAGCTGGTTGTAGTCATGCCGGTACAATCGATCACAAAAACCCATTGTGTAACCCCAGACTTCATACTTTTGATTGCATTTTCAGTTGTATATATCAAATGAGTTATTGCATCGTTTGACATATTGCTATTTGAAATAGCTTGAGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8675#0 ------------------------------------------------------------ consensus_8675#1 CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGA 60 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 ------------------------------------------------------------ consensus_8675#1 TTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAAT 120 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 ------------------------CTCGAGGCCAAAAATTCG-GCACGAGGAGGACCAGC 35 consensus_8675#1 AATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGC 180 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 ATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGT 95 consensus_8675#1 ATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGT 240 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 TTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGA 155 consensus_8675#1 TTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGA 300 consensus_8675#2 --------------------------------TAATGATCAGCCATTATTCAGGCACATT 28 ** * ** ** * ** consensus_8675#0 AACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAA 215 consensus_8675#1 AACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAA 360 consensus_8675#2 CGTAACCAAAACGAGGATGAC--AGCTGGTTGTAGTCATGCCGGTACAATCGATCA-CAA 85 * *** * ***** * * * * ** *** * * * *** consensus_8675#0 ATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGA 275 consensus_8675#1 ATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGA 420 consensus_8675#2 AAACCCATTGT----GTAACCCC--AGACTTCATACTTTTGATTGCATTTTCAGTTGT-A 138 * *** * * ** *** * * * ** * * * * * ** ** * consensus_8675#0 TCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCC 335 consensus_8675#1 TCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCC 480 consensus_8675#2 TATATCAAATG--AGTTATTGCATCGTTTGACATATTGCTATTTGAAAT-----AGCTTG 191 * * * *** ** **** * ** * * ** * * * * * ** * * consensus_8675#0 AAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTG 395 consensus_8675#1 AAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTG 540 consensus_8675#2 AGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT---------- 241 * * * ** ** ***** ***** * **** ** * consensus_8675#0 CTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGA 455 consensus_8675#1 CTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGA 600 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 AGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATTACC 515 consensus_8675#1 AGAACACGANNATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT--- 657 consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 AAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTA 575 consensus_8675#1 ------------------------------------------------------------ consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 GAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCA 635 consensus_8675#1 ------------------------------------------------------------ consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 CTAAAAGATATATACCAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTT 695 consensus_8675#1 ------------------------------------------------------------ consensus_8675#2 ------------------------------------------------------------ consensus_8675#0 TTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANATTT 750 consensus_8675#1 ------------------------------------------------------- consensus_8675#2 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||