These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTAGTGTCACTAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTCATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTCATCTTTCGTGAGGTGCTTTTAGATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACATATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCGCGTAGAGAAGACAGATCGATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGTTATTAGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTCCCATCAGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGANAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA] [+] EMBL CD201439 [ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTAGTGTCACTAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTCATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTCATCTTTCGTGAGGTGCTTTTAGATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACATATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCGCGTAGAGAAGACAGATCGATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGTTATTAGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTCCCATCAGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGANAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA] consensusID : consensus_8692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 496 fasta sequence [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG-AAAAGACCACACATTACCA-TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG] [+] EMBL CD198870 [ACAAACAACTGATCAATTGAGTGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGGAAAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGT ] [+] EMBL CD199031 [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCANAAGATAANAATCACTCAGATTTATCGTATTTTAATCAACTAATTGNGGA ] [+] EMBL CD198941 [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAANAATCACTCAGATTTATCGTATTTTAATCAACTAATTGnnn ] [+] EMBL CD199036 [ACAAACAACTGATCAATTGAATGAACAATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCGGCTTCTGCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCG ] [-] EMBL CD198978 [ TAAACAGTCGTCTAAAAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGG AAAAGACCACACATTACCA TTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATCTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG] [-] EMBL CD199126 [ aTACCATTTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTTTAATCAACTAATTGGGGAAAAAGGACTCAAATATAGTGTATGTCTTAATGATGTGCGAAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATCCAAAGCACATGAATTATATGGACAAAAGCTTTTTCCGACTACTGGTGCATGGTTTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8692#0 ACTGTTAAGACCTTTATGTTAAAGTCTCACTGTATATACTTCAGTTCGAACATCTGAGTA 60 consensus_8692#1 ---------------------------------ACAAACAACTGATCAATTGAATGAACA 27 * * ** * * ** * *** * consensus_8692#0 GTGTCAC---TAGTCTTCATATACAAGTAGTGTGGATGACAGCTAAATTCACAAACTTTC 117 consensus_8692#1 ATTTAATACACATTCTCGTCGTATATATGATATAGTCAACTGTTTAAATCG---GCTTCT 84 * * * * *** ** * * * * * ** * * ** ** *** consensus_8692#0 ATTAGTGAATTAGATTCTCCAACAATATTCAATTAGTC-ATCTTTCGTGAGGTGCTTTTA 176 consensus_8692#1 GCGATCCGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTGTAAAGCCTTATCG 144 * * * * ** *** * * *** * *** ** * * * * consensus_8692#0 GATATCTTTTACCTTAAAACACCAGACTTTTTATTCCCATCTTACTGAAATAACACACAT 236 consensus_8692#1 TGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAAAAGAAACTGAACC 204 * * * *** * * * * * ** * ** *** * consensus_8692#0 ATGACCTTTTCGTTGTACGTCTGACTGTTTATATATACTGAGAATGAGAAAGCTTTTGCG 296 consensus_8692#1 AT--CTTTTTCTCCCTTGGTATCACGATCAAAGTATCAAGAAAATGGAAAAGACCACACA 262 ** * ***** * ** * ** * * *** ** **** **** * consensus_8692#0 CGTAGAGAAGACAGATC--GATACTTGAGAAAATTCAAGCCATGAAGAATTCAAGTCTGT 354 consensus_8692#1 T-TACCATTGAAAGTTTCAAATAATTCAAAAGATAAAAATCACTCAGATTTATCGTATTT 321 ** ** ** * *** ** * ** ** ** ** *** ** ** * * consensus_8692#0 TATT--AGTAATGATGGATATACTTTTCTTTTCATATAATCCCTCTTATTATTATTTTTC 412 consensus_8692#1 TAATCAACTAATTGGGGAAAAAGGACTCAA---ATATAGTGTATGTCTTAATGATGTGCG 378 ** * * **** *** * * ** ***** * * * * ** ** * consensus_8692#0 CCATCAGCTTCTGCGATC-CGAAGAACCTATCTCTATGAATTTATCTGGTCCAATTTTTG 471 consensus_8692#1 AAGTCAACCGGTGTGTTTACTCCCAACTGGTTGGGAAGCAGCTACATTGAGTGCAATATC 438 *** * ** * * * *** * * * * ** * * * * consensus_8692#0 TAAAGCCTTATCGTGAACTATACATAGGCAAATGGCCAAATGAATTAAACAGTCGTCTAA 531 consensus_8692#1 CAAAGCA----CATGAATTATA--TGGACAAAAGCTTTTTCCGACTA--CTGGTGCATGG 490 ***** * **** **** * * **** * * ** * * * * consensus_8692#0 AAGAAACTGAACCATCTTTTTCTCCCTTGGTATCACGATCAAGGTATNCAGAANAATGGA 591 consensus_8692#1 TTTGTG------------------------------------------------------ 496 consensus_8692#0 NAGACACACATTACCATTGAAAGTTTCAAAATATTCAAAGA 632 consensus_8692#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||