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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 716 fasta sequence
[GGTAATGTGGGACATCGTTAGCTTGTTTACCTGTTATGTCAAAATATGTACATTATAATTACAACGAAATATGTTTGTATGTAAGAAAATAAGCTAACTGATAAAGAAAAAAAAACAAGCCACAATCTACTATCAGTAAAACTATATCCCGGTCGCATTTAGAATTTAACTATATCACTGTTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTCCCTTCCCTTTTCTCCTTCAATCATCTGTCTTCTGTGATTTTTTTTTCTGACTTCATT--GCGATACCAGTATGTCTGTGTGTGTGTGTGTGCGCGCGTTTGTATTC]
[+] EMBL CD198708 [GGTAATGTGGGACATCGTTAGCTTGTTTACCTGTTATGTCAAAATATGTACATTATAATTACAACGAAATATGTTTGTATGTAAGAAAATAAGCTAACTGATAAAGAAAAAAAAACAAGCCACAATCTACTATCAGTAAAACTATATCCCGGTCGCATTTAGAATTTAACTATATCACTGTTCTTTCTCTTTCATTTATCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACT ]
[-] EMBL CD095721 [ GTAATGTGGNACATCATTAGCTTGTTTACCTGTTATGTCAAAATATGTACATTATAATTACAACGAAATATGTTTGTATGTAAGAAAATAAGCTAACTGATAAAGAAAAAAAAACAAGCCACAATCTACTATCAGTAAAACTATATCCCGGTCGCATTTAGAATTTAACTATATCACTGTTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTCTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCT ]
[+] EMBL CD147235 [ TAACTATATCACTGTTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCTAACGTGCACAGGTGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCACCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTCCCTTCCCTTTTCTCCTTCAATCATCTGTCTTCTGTGATTTTTTTTTCTGACTTCATT GCGATACCAGTATGTCTGTGTGTGTGTGTGTGCGCGCGTTTGTATTC]
[-] EMBL CD086390 [ AACTATATCACTGTTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTCATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTCCCTTCCCTTTTCTCCTTCAATCATCTGTCTTCTGTGATTTTTTTTTCTGACTTCATTNNGCGAcnccgg ]
[-] EMBL CD143591 [ AACTATATCACTGTTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACGTTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTCTTTTACAGTTTAAGACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTCCCTTCCCTTTTCTCCTTCAACCATCTGTCTTCTGTGATTTTTTTTTttc ]
consensusID : consensus_8706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[GATTTTAGTGAGGAGATAGTATATGAGTGAAATCCAAAGAAAGACATTCCAGGAGTGCCAATATAAAGAAATACATAAAACAAAGGAACGCCTAATAAACTTAGGAACAATATATAGACAAAGTGGAGGTTAATGCAAGAAAGCGGTTAAGTCATGTGATAAAAGAAAGAAACAAGGATTGCACGTGTGAACATGAACAATCTATGGAACTGTACATACAAAATACAGTTACATACATACTTATCATGACAATAAAATAGATGATATTTTGGAAGTAAAATCATATCATGTACACATGTCTTTAGTAATAATCTAAAAAGCGCTAAATATAAAGACAAAACACAACAACGAATATGAAACAAGACGATAGAGTTCAGCATAATGACGATACACAATACGATGATGATAAGAATACACTCATTTACACATTGACAGAAACAACAAACAAAGAATGAGAAAAATGCATATTATATATGCATAGGATAAATAATTTAAGACAGAGTTCAATGTAGTAAAATACAAGCTAAGAAAGTATACAAGAGTATTTATAAAGAGGGTGCAATCCTCCTCTTGTTCTCGTCTACTCACAATGATCAGTCTC]
[+] EMBL CD096399 [GATTTTAGTGAGGAGATAGTATATGAGTGAAATCCAAAGAAAGACATTCCAGGAGTGCCAATATAAAGAAATACATAAAACAAAGGAACGCCTAATAAACTTAGGAACAATATATAGACAAAGTGGAGGTTAATGCAAGAAAGCGGTTAAGTCATGTGATAAAAGAAAGAAACAAGGATTGCACGTGTGAACATGAACAATCTATGGAACTGTACATACAAAATACAGTTACATACATACTTATCATGACAATAAAATAGATGATATTTTGGAAGTAAAATCATATCATGTACACATGTCTTTAGTAATAATCTAAAAAGCGCTAAATATAAAGACAAAACACAACAACGAATATGAAACAAGACGATAGAGTTCAGCATAATGACGATACACAATACGATGATGATAAGAATACACTCATTTACACATTGACAGAAACAACAAACAAAGAATGAGAAAAATGCATATTATATATGCATAGGATAAATAATTTAAGACAGAGTTCAATGTAGTAAAATACAAGCTAAGAAAGTATACAAGAGTATTTATAAAGAGGGTGCAATCCTCCTCTTGTTCTCGTCTACTCACAATGATCAGTCTC]
consensusID : consensus_8706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[CTCTTTATAAATACTCTTGTATACTTTCTTAGCTTGTATTTTACTACATTGAACTCTGTCTTAAATTATTTATCCTATGCATATATAATATGCATTTTTCTCATTCATTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTC]
[-] EMBL CD095608 [CTCTTTATAAATACTCTTGTATACTTTCTTAGCTTGTATTTTACTACATTGAACTCTGTCTTAAATTATTTATCCTATGCATATATAATATGCATTTTTCTCATTCATTGTTTGTTTAGTTCCTTTGTTGTATTCTTCTGCTTATGTGTATTGAACTCTTGAACTTCTTTATGTCCTAATACACCAAACGTGCACAGATGTGCATTTGTATGCACCATAAACTTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATATTAACATTCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATTATTATTATCATCATTATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAAACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAATCTCTTTTGGTGCTTCTTACTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8706#0 GGTAATGTGGGACATCGTTAGCTTGTTTACCTGTTATGTCAAAATATGTACATTATAATT 60
consensus_8706#2 ------------------------------------------------------------
consensus_8706#1 -------------------------GATTTTAGTGAGGAGATAGTATATGAGTGAAATCC 35
consensus_8706#0 ACAACGAAATATGTTTGTATGTAAGAAAATAAGCTAACTGATAAAGAAAAAAAAACAAGC 120
consensus_8706#2 ------------------------------------------------------------
consensus_8706#1 AAAGAAAGACAT-TCCAGGAGTGCCAATATAAAGAAATACATAAAACAAAGGAACGCCTA 94
consensus_8706#0 CACAATCTACTATCAGTAAAACTATATCCCGGTCGCATTTAGAATTTAACTATATCACTG 180
consensus_8706#2 -----CTCTTTATAAATACTCTTGTATACTT-TCTTAGCTTGTATTTTACTACAT---TG 51
consensus_8706#1 ATAAACTTAGGAACAATA----TATAGACAAAGTGGAGGTTA-ATGCAAGAAAGCGGTTA 149
* * ** * ** * * * ** * * *
consensus_8706#0 TTCTTTCTCTTTCATTTTTCTGTTAGTGGTTTCTTTATATGCTTTTCTGCAGTTTTTTTG 240
consensus_8706#2 AACTCTGTCTTAAATTATTTATCCTATGCATATATAATATGCATTTTTCTCATTCATT-G 110
consensus_8706#1 AGTCATGTGATAAAAGAAAGAAACAAGGATTGCAC-GTGTGAACATGAACAATCTATGGA 208
* * * * * * * ** * * *
consensus_8706#0 TTTGTTTAGTTCCTTT---GTTGTATTCTT-CTGCTTATGTGTATTGAACTCTTGAACTT 296
consensus_8706#2 TTTGTTTAGTTCCTTT---GTTGTATTCTT-CTGCTTATGTGTATTGAACTCTTGAACTT 166
consensus_8706#1 ACTGTACATACAAAATACAGTTACATACATACTTATCATGACAATAAAATAGATGATATT 268
*** * * *** ** * * ** * *** ** ** *** **
consensus_8706#0 CTTTATGTCCTAATACACCAAACGTGCACAGATGT-GCATTTGTATGCA---CCATAAAC 352
consensus_8706#2 CTTTATGTCCTAATACACCAAACGTGCACAGATGT-GCATTTGTATGCA---CCATAAAC 222
consensus_8706#1 TTGGAAGTAAAATCATATCATGTACACATGTCTTTAGTAATAATCTAAAAAGCGCTAAAT 328
* * ** * * * ** ** * * * * * * * * * ****
consensus_8706#0 TTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATAT--TAACAT 410
consensus_8706#2 TTTGCAATATCATATATGAATGATTCAGAAAAGTGACATTTCTATCTAATAT--TAACAT 280
consensus_8706#1 ATAAAGACAAAACACAACAACGAATATGAAACAAGACGATAGAGTTCAGCATAATGACGA 388
* * * * * * ** ** * **** *** * * * ** * **
consensus_8706#0 TCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATT 470
consensus_8706#2 TCAAAGAAATAAGAACCTTGTCTTCTTTCTCTATATTGCATTACTGTTATTGTTATTATT 340
consensus_8706#1 TACACAATACGATGATGATAAGAATACACTCATTTACACATTGACAGAAACAACAAACAA 448
* * * * * * * *** * **** * *
consensus_8706#0 ATTATTATCATCAT-TATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAA 529
consensus_8706#2 ATTATTATCATCAT-TATTTTACTGTTTTATTTGGCATTTACTGTATTTTACAGTTTAAA 399
consensus_8706#1 AGAATGAGAAAAATGCATATTATATATGCATAGGATAAATAATTTAAGACAGAGTTCAAT 508
* ** * * ** ** *** * ** * * ** * ** * **** **
consensus_8706#0 ACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAAT 589
consensus_8706#2 ACTTTCTTATACTATCTAATAAACTGGATGTCTCCCAGACCTATTATTATCTTCTGTAAT 459
consensus_8706#1 GTAGTAAAATACAAGCTAAGAAAGTATACAAGAGT---ATTTATAAAGAGGGTGCAATCC 565
* **** * **** *** * * * *** * * *
consensus_8706#0 CTCTTTTGGTGCTTCTTACTGTCCCTTCCCTTTTCTCCTTCAATCATCTGTCTTCTGTGA 649
consensus_8706#2 CTCTTTTGGTGCTTCTTACTGTC------------------------------------- 482
consensus_8706#1 TCCTCTTGTTCTCGTCTACTCACAATGATCAGTCTC------------------------ 601
** *** * **** *
consensus_8706#0 TTTTTTTTTCTGACTTCATTGCGATACCAGTATGTCTGTGTGTGTGTGTGTGCGCGCGTT 709
consensus_8706#2 ------------------------------------------------------------
consensus_8706#1 ------------------------------------------------------------
consensus_8706#0 TGTATTC 716
consensus_8706#2 -------
consensus_8706#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||