These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1116 fasta sequence [AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT-AATACCTTCAGTTTGTTCCCCAG-ATAC-TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG-AATGACCTGCGCTTG-TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA] [+] EMBL CD170820 [AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAAATACCTTCAGTTTGTTCCCCAGAATACTTTTACGTATAGACTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGGATTGCATACTTGTATGGAATCGTTTATATG ] [+] EMBL CD188807 [ AAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT AATACCTTCAGTTTGTTCCCAAG ATAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAA ] [+] EMBL CD088746 [ TAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTACGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG AATGACCTGCGCTTG TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATT ] [+] EMBL CD195889 [ TAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAGTAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGANACTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTC AATGTTAACCCAGTATTGTTTGNNATGA CTGCGCTTGNNTGATG ACTATT ] [+] EMBL CD159295 [ TATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTTTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA] consensusID : consensus_8707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT] [+] EMBL AA999551 [ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT] consensusID : consensus_8707#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC] [-] EMBL CD089714 [TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8707#0 AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGT 60 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 -----------------------------------------------------------A 1 consensus_8707#0 TTTGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 119 consensus_8707#2 --TGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 57 consensus_8707#1 TCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTT 61 * ** ** ** ** ** * ** ***** ** ****** consensus_8707#0 -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGCTCTGAAGTGCAT 177 consensus_8707#2 -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGTTCTGAAGTGCAT 115 consensus_8707#1 TAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATG---TGCGCTTTTGTTGGGTTT 118 * * * * * ** ** * **** * * ** * * ** * * * consensus_8707#0 AGGAAATCG-GAATCCATCACA--TTTAGGGGATTTTTAGGTCTAGGTAATGTG----GA 230 consensus_8707#2 AGGAAATCG-GAATCCATCAC---CTAATAGGA-----AAAAAAACATATAGTG----AA 162 consensus_8707#1 ATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGC 178 * *** * * ** * ** ** * ** * * * *** consensus_8707#0 GAATTC-TCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAA-TACCTTCAGTT 288 consensus_8707#2 GTTTTCGTTTCTGTGAACTTTGCGTT--ATACTTCAGGTACTCGTTGAGTGCCCTC---- 216 consensus_8707#1 CAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCT 238 * * * * ** * * * * ** * * ** consensus_8707#0 TGTTCCCCAGATACTTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTG 348 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 GAATGGTGACGGATTCCGGT---------------------------------------- 258 consensus_8707#0 TTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATG 408 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCT 468 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTA 528 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCG 588 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TCAAATGTTAACCCAGTATTGTTTGAATGACCTGCGCTTGTTGATGAACTATTTTGATTC 648 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTT 708 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 GTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGT 768 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATA 828 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGAT 888 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTT 948 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 GGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAA 1008 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 CCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAA 1068 consensus_8707#2 ------------------------------------------------------------ consensus_8707#1 ------------------------------------------------------------ consensus_8707#0 TTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA 1116 consensus_8707#2 ------------------------------------------------ consensus_8707#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||