These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence [TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACGGTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAAGATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTAAAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGCCAACATAGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAATAGGATCAGTACCTT-T-AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATATCAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAAATATCTTCATAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCTTCAAGAANAACGCTGAA] [-] EMBL CD188015 [TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACGGTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAAGATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTAAAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGCCAACATAGTTACACGTGGACCAACCATTATATCGAATTCCACATAGAATTCCATCGGAATAGGATCAGTACCTTGTGAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGATAAATAATTGACAATTGGGTAACTGGGAACCTGGGGCACAAAATAATGGACATATCAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAAATATCTTCATAAATG ] [+] EMBL CD111883 [ AGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAATAGGATCAGTACCTT T AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACAT TTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCTTCAAGAANAACGCTGAA] [+] EMBL CD110747 [ AGTTAAACGGGGCCCAACCATTCTATCAAATTCCACAAAAAATTCCTTCGGAATAGGATCAGTACCTT T AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGAAAATGGGAACCTGGGGCACAAATTAATGG ] consensusID : consensus_8719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 588 fasta sequence [AGCTAATTTACTTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATATATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAATAATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC] [-] EMBL CD069578 [AGCTAATTTACTTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATAT ] [-] EMBL BG932507 [ ggaggAAG GGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCG ] [+] EMBL CD183270 [ GGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAATAATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC] consensusID : consensus_8719#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTATCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAATAGACAAGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTGAACTCGCAACAGATGGTACTGAAATAACAATTACAATTTGTATGCTGGGAGTTAAACTTTTGAAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAATTTGTAAAAGTTGCAATAGCTTCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGATTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA] [+] EMBL CD118551 [AGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTATCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAATAGACAAGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTGAACTCGCAACAGATGGTACTGAAATAACAATTACAATTTGTATGCTGGGAGTTAAACTTTTGAAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAATTTGTAAAAGTTGCAATAGCTTCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGATTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8719#0 TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACG 60 consensus_8719#1 ------------------------------------------------------------ consensus_8719#2 ------------------------------------------------------------ consensus_8719#0 GTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAA 120 consensus_8719#1 ------------------------------------------------------------ consensus_8719#2 ------------------------------------------------------------ consensus_8719#0 GATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTA 180 consensus_8719#1 ------------------------------------------------------------ consensus_8719#2 ------------------------------------------------------------ consensus_8719#0 AAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGC 240 consensus_8719#1 ------------------------------------------------------------ consensus_8719#2 ------------------------------------------------------------ consensus_8719#0 CAACATAGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAAT 300 consensus_8719#1 --------------------------------------------------------AGCT 4 consensus_8719#2 ------------------------------------------AGTTGGTTCAATCGATAT 18 * consensus_8719#0 AGGATCAGTACCTTT--AATAAGTAAACAAAGGACAGCTCTT--AAAGCCTGATAGGTAA 356 consensus_8719#1 AATTTACTTACCTTT--AATAAGTAAACAAAGGACAGCTCTT--AAAGCCTGATAGGTAA 60 consensus_8719#2 AAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAA 78 * * * ** ** ** ** ** * * **** * ***** * ** **** consensus_8719#0 TTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATATCAATTTGC 416 consensus_8719#1 TTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACAT-TTAATTTGC 119 consensus_8719#2 GTA-TCGAGAA---AAGAAGTGCTCTAATTTAGCTTTTATTATTT--CATAATCACACGT 132 ** * ** ** ***** * ** **** * *** * * consensus_8719#0 TGGGACAAATCAGATAAGTCCTT--TGGACCAACAAAATATCTTCATAAATGTTTAGATT 474 consensus_8719#1 TGGGACAAATCAGATAAGTCCTT--TGGACCAACAAGATATCTTCCTAAATGTTTAGATT 177 consensus_8719#2 TTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAAT-AGACA 191 * ** * * *** * * **** ** * * * *** ** * *** consensus_8719#0 TTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAA-TAAATAGAAATGAATTT 533 consensus_8719#1 TTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAA-TAAATAGAAATGAATTT 236 consensus_8719#2 AGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTG 251 * * ** * *** ***** * ***** ** ** ** ** consensus_8719#0 AAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCT 593 consensus_8719#1 AAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCT 296 consensus_8719#2 AACTCGCAACAGATGGTACTGAAATA--ACAATTACAATTTGTATGCTGGGAGTTAAACT 309 ** * * * * ** ** * *** * * * * * * * *** * ** consensus_8719#0 TCAA-GAANAACGCTGAA------------------------------------------ 610 consensus_8719#1 TCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGG 356 consensus_8719#2 TTTG-AAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAAT 368 * ** * * consensus_8719#0 ------------------------------------------------------------ consensus_8719#1 CCATGAATACGACCAAAATCAGTTGGTTCAATCGATATATATTGAATTCCGTTGAAACAA 416 consensus_8719#2 TTGTAAAAGTTGCAATAGCT--TCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGA 426 consensus_8719#0 ------------------------------------------------------------ consensus_8719#1 TCCAATATATC-ACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAAT 475 consensus_8719#2 TTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA--- 483 consensus_8719#0 ------------------------------------------------------------ consensus_8719#1 AATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAG 535 consensus_8719#2 ------------------------------------------------------------ consensus_8719#0 ----------------------------------------------------- consensus_8719#1 AAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC 588 consensus_8719#2 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||