These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 831 fasta sequence [AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTCAGCTGATCGAACTATACGTATATGGTGCCTACGTGGTCTTAACCAAGATATAAGTTTGCCTGACATAATTTTATTAAATTCTTTAAATGAACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTCACGATTTTTATCAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGCCGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATCGAT] [-] EMBL CD148027 [AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTCAGCTGATCGAACTATACGTATATGGTGCCTACGTGGTCTTAACCAAGATATAAGTTTGCCTGACATAATTTTATTAAATTCTTTAAATGAACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTCACGATTTTTATCAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACT ] [-] EMBL CD161619 [ ATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTACTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATTTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGCCGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTA ] [-] EMBL CD062667 [ GGGAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATCGAT] [+] EMBL CD182101 [ ATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAGGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGA ] consensusID : consensus_8722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTATTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTGTTTTCACATTAGAGGGGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCATCGGTAACTTCTGAATAGTTTCCCAAAGTGAACTAAATTCATACAATTCAGTGGTGCATCACATTCATGTTTTTTATTGAAAAAGTTCGGGAATTATCTGCGAGTTGATATAATTTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCACAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTAAAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACTTCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC] [+] EMBL CD178607 [TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTATTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTGTTTTCACATTAGAGGGGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCATCGGTAACTTCTGAATAGTTTCCCAAAGTGAACTAAATTCATACAATTCAGTGGTGCATCACATTCATGTTTTTTATTGAAAAAGTTCGGGAATTATCTGCGAGTTGATATAATTTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCACAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTAAAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACTTCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC] consensusID : consensus_8722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [AGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACGACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATTTTAAGGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGTTTTGAACAATTTACCGGGAGTTGGGGCTTTAACGAAACCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTNGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCATATCG] [+] EMBL CD095530 [AGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACGACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATTTTAAGGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGTTTTGAACAATTTACCGGGAGTTGGGGCTTTAACGAAACCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTNGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCATATCG] consensusID : consensus_8722#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTCTTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAGTTTGTTTCCTGTGGTGAAGATAGAAG] [+] EMBL CD165118 [GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTCTTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAGTTTGTTTCCTGTGGTGAAGATAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8722#1 --------------TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTA 46 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTC--AGCTGATCGAACTA 58 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 TTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTG 106 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 TACGTATATGGTGCCTACGTGGTCTTAACC-AAGATATAAGTTTGCCTGACATAATTTTA 117 consensus_8722#2 ----------------------------------------AGCTATGGTACCGAATGGTG 20 consensus_8722#1 TTTT-CACATTAGAGG-GGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAA-- 162 consensus_8722#3 -------------------------GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAA-- 33 consensus_8722#0 TTAAATTCTTTAAATG-AACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTC 176 consensus_8722#2 ATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACG-- 78 * ** * consensus_8722#1 AAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGA------AGAA 216 consensus_8722#3 AAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGA------AGAA 87 consensus_8722#0 ACGATTTTTATCAGCAAGCAATGATGCCAGT--ATAAGAGCTTGGGATGCTACTACGGGC 234 consensus_8722#2 ACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATT------TTAA 132 * * * * ** * * * * * consensus_8722#1 AAGTGT-GTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCA 275 consensus_8722#3 AAGTGT-GTTTCTACTCTCACAGCAAGCAATGATGCCAG---TATAAGAGCTTGGGAT-- 141 consensus_8722#0 AAATGT-ATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCC 293 consensus_8722#2 GGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGT--TTTGAACAATTTACCGGGA 190 * ** * ** * * * consensus_8722#1 TCGGTAACTTCTGAATAGTTTCCCAAAGTGAAC-TAAATTCATACAA--TTCAGTGGTGC 332 consensus_8722#3 ---GCTACTACGGGCAAATGTCTTGGAGAATTT-TATGGGCACACAAATTTTGTTTATGG 197 consensus_8722#0 T-AATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGC 352 consensus_8722#2 GTTGGGGCTTTAACGAAA----CCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGA 246 * * * * * * consensus_8722#1 ATCACATTCATG--TTTTTTATTGAAAAAGTTCGGGAATTATCTGCGA-GTTGATATAAT 389 consensus_8722#3 ATTG-GCTTGTT--CGCCTAATTTTCCAAGTTTG----TTTCCTGTGGTGAAGATAGAAG 250 consensus_8722#0 CTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGC 412 consensus_8722#2 CGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTN---GGATTAAAG 303 * * * consensus_8722#1 TTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCA 449 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 CGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCA 472 consensus_8722#2 TTGGTGACGTTGTAGGAAGTCAA-CCTTCATATCG------------------------- 337 consensus_8722#1 CAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTA 509 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 GGGAA-ATCGGAAGGA--CAGATCATGGTTATTAACGACGATGGTTGTTCTGTT-TGCTA 528 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 AAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACT 569 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 TCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACC 588 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 TCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC--------- 620 consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 TTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGA 648 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 ------------------------------------------------------------ consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 CGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGC 708 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 ------------------------------------------------------------ consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 TCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTT 768 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 ------------------------------------------------------------ consensus_8722#3 ------------------------------------------------------------ consensus_8722#0 CATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATC 828 consensus_8722#2 ------------------------------------------------------------ consensus_8722#1 --- consensus_8722#3 --- consensus_8722#0 GAT 831 consensus_8722#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||