These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 482 fasta sequence [ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA-AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG-GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT-AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA-AATAGACGTG-AC-ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGTTT] [+] EMBL CD165927 [ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGACCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAGAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGTGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCACATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTACAATTCACAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGACGGTACACTAGACGTGCACGATTAAAAGCAACGCACTATGACCTTCGATTTGAAAT T ACCGTGACAAAATCTCATGATGAAGTCAAATGGTTTCAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCC ] [+] EMBL CD165897 [ CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGACTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTGTGACCTTCGATTTGAAATATAACCGTGACGAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGTTT] [-] EMBL CD165949 [ CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCG ] [+] EMBL CD165939 [ CAGACCAAAAGGAAGAGTACGATCTGTGATTCAATAAACGGTATGATTTTCAACTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTNATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCC ] [+] EMBL CD165890 [ CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACAACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCT ] [-] EMBL CD165916 [ GTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAGTATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAGCAAAAGGAACTTTCACTCAACGGGCTTCCG ] consensusID : consensus_8723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [CCTTTTTTACAGACCAAAAGGAAGAGTACGATCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC] [-] EMBL CD143808 [CCTTTTTTACAGACCAAAAGGAAGAGTACGATCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8723#0 ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGA 60 consensus_8723#1 -----CCTTTTTTACAGACCAAAAGGAAGAGTACGATC---------------------- 33 ********************************* consensus_8723#0 TTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTT 120 consensus_8723#1 --------------------GATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTT 73 **************************************** consensus_8723#0 TTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATC 180 consensus_8723#1 TTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATC 133 ************************************************************ consensus_8723#0 TTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAA 240 consensus_8723#1 TTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAA 193 ************************************************************ consensus_8723#0 ATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATTAAAGA 300 consensus_8723#1 ATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC--------------------- 232 *************************************** consensus_8723#0 TGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTAAATAGACGTGACATTA 360 consensus_8723#1 ------------------------------------------------------------ consensus_8723#0 AAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGT 420 consensus_8723#1 ------------------------------------------------------------ consensus_8723#0 TCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGT 480 consensus_8723#1 ------------------------------------------------------------ consensus_8723#0 TT 482 consensus_8723#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||