These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 639 fasta sequence [TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC-TTTGAAAAGT-CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA-TGGGGGCTAGAATGTCGTGGTTGTACTG-AAAA-AGAGATTATATCAGCTTGATTAAAAGT-ATATGCACAAGCATGATCCTGAAGCAGCAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGTTATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT] [+] EMBL CD078020 [TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTT AAACATCCGCGGCGAATATT ] [+] EMBL SMT14555 [ GTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGANGAAATATGACCCATCAAATTGCGAAGTGTGCATAANGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTTGAAAAGTCCCAAAGTGGAGGATCTTAAGAAGTCCATAGAGAGATTGGGGGCTAGAATGTCGTGGTTGTACTG AAA ] [+] EMBL CD140030 [ GTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA TGNGGGCTAGAATGTCGTGGTTGTACTG AAAA AGAGATTATATCAGCTTGATTAAAAGT ATATGCACAAGCATGATCCTGAAGCAGCAGCTTATCTTCAAGCAAGG ] [-] EMBL CD113939 [ TTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA TGGGGGCCAGAATGTCGTGGTTGTACTGAAAAA AGCGATTATATCAGCTTGATTAAAAGTAATATGCACAAGCATGATCCTGAAGCAGCAG ] [-] EMBL SMT14554 [ AAGCTGTTCAAAATAGACTCTCAAATCTGTGNTCTTAGATACGANAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGNTCTTAAGAAGATCATAGAGAGA TGGGGGCTAGAATGTCGTGGTTGTACTG AAAANAGAGATTATATCAGCTTGATTAAAAGTAATATGCACAAGCATGANCCTGAAGCAGCAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGTTATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT] consensusID : consensus_8734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 429 fasta sequence [GAGGTTGATTACTGTTTCTACATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCCAAAGTGAAG] [+] EMBL CD084018 [GAGGTTGATTACTGTTTCTACATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCCAAAGTGAAG] [+] EMBL SM3911 [ TAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8734#0 --------------TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTAC 46 consensus_8734#1 GAGGTTGATTACTGTTTCTAC-ATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTAC 59 * ** * ************************************ consensus_8734#0 AACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCAT 106 consensus_8734#1 AACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCAT 119 ************************************************************ consensus_8734#0 AAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAA 166 consensus_8734#1 AAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAA 179 ************************************************************ consensus_8734#0 AATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTG 226 consensus_8734#1 AATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTG 239 ************************************************************ consensus_8734#0 TTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCC 286 consensus_8734#1 TTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCC 299 ************************************************************ consensus_8734#0 AATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCA 346 consensus_8734#1 AATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCA 359 ************************************************************ consensus_8734#0 AATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTC 406 consensus_8734#1 AATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTC 419 ************************************************************ consensus_8734#0 CAAAGTGAAGGATCTTAAGAAGATCATAGAGAGATGGGGGCTAGAATGTCGTGGTTGTAC 466 consensus_8734#1 CAAAGTGAAG-------------------------------------------------- 429 ********** consensus_8734#0 TGAAAAAGAGATTATATCAGCTTGATTAAAAGTATATGCACAAGCATGATCCTGAAGCAG 526 consensus_8734#1 ------------------------------------------------------------ consensus_8734#0 CAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGT 586 consensus_8734#1 ------------------------------------------------------------ consensus_8734#0 TATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT 639 consensus_8734#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||