cluster # 8744

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Schistosoma mansoni
cluster # 8744 cluster # 8744 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8744#0 length = 900 sequences # 5

consensus_8744#1 length = 243 sequences # 1
consensus_8744#2 length = 232 sequences # 1

consensusID : consensus_8744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 900
fasta sequence

                              [AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTGACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG-AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTTCCG-ACGGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTGATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGGATTTTCTTCAGGG]

[-] EMBL AW587524             [AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTGACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTGAAATCGGcgtgccgaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD157350             [                                                                                                                                                                GATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGGACCTGACAGTAT                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD140136             [                                                                                                                                                                                            gtcgggACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCACTTATACCATCTTCACATTCATCTG AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTTACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTCTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTCCCG ACG                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD161613             [                                                                                                                                                                                                                                                                        G AATCGGAAGCATCTTGTGGTACAGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACGTGGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTTTAGTAC GCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTGATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGGATTTTCTTCAGGG]
[-] EMBL CD095535             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGCGAGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCCCGTTGAGTATCAAGTT                                                                                                                                                                                                                                                                                             ]




>consensus_8744#0
AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTT
TGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTG
ACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTA
TTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTCA
CTTATACCATCTTCACATTCATCTGAATCGGAAGCATCTTGTGGTACAGAGTATATGCGA
AGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGGCATTTTCATGAAG
AAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAAATTCAGCTGATTG
GCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCGAGATGAGTCACGG
GGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGACAGTATACTACAG
ACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGCCAAAACAGCCCCC
CGTTGAGTATCAAGTTCCGACGGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCA
TTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGA
AGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATG
CGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTGATTTTTATTTTGA
GATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGGATTTTCTTCAGGG

consensusID : consensus_8744#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [TTAATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTGACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTNACTTATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA]

[-] EMBL AI764897             [TTAATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTGACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAATAACTGCTTCTTCTTNACTTATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA]




>consensus_8744#1
TTAATAGGTAATTATTTTGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAA
TCGTCCTTGACTGAGTGACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGAT
TATGTCCTGACATGTTATTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAACAA
TAACTGCTTCTTCTTNACTTATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATT
GCA

consensusID : consensus_8744#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [CAGCCCCCCGTTGAGTATCAAGTTTAGTACGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGCCTG]

[-] EMBL CD078011             [CAGCCCCCCGTTGAGTATCAAGTTTAGTACGCCAATCGACACCACCGCAATAGCGTGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGCCTG]




>consensus_8744#2
CAGCCCCCCGTTGAGTATCAAGTTTAGTACGCCAATCGACACCACCGCAATAGCGTGAAT
CAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATCACTAG
TTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCCCAAAT
CAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8744#0      AAAATAACATGTCCGAACCGGAATAAAGTTTTCGGTGTAGTTCTTGATAGGTAATTATTT 60
consensus_8744#1      -------------------------------------------TTAATAGGTAATTATTT 17
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      TGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTAAATCGTCCTTGACTGAGTG 120
consensus_8744#1      TGAAGATACTTGTCAAGTATGAGTTACGATTCAGTATGCTCAATCGTCCTTGACTGAGTG 77
consensus_8744#2      --CAGCCCCCCGTTGAGTATCAA-----GTTTAGTACGC-CAATCGACACCACCGCAATA 52
                         **   *  **  ***** *       ** **** **  ***** *     *  * * 

consensus_8744#0      ACAGCTTCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTA 180
consensus_8744#1      ACAGCATCAGTCTTTCTTTACTGACCGTCTATACCGTCTTGATTATGTCCTGACATGTTA 137
consensus_8744#2      GCGTGAATCAAATTCATTTAGCGCGCGTATA---CATACGAATTGTGGAGTGGCTGGCTG 109
                       *          **  ****  *  *** **   * *    *** **   ** *  * * 

consensus_8744#0      TTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAAC-AATAACTGCTT------- 232
consensus_8744#1      TTTACTTCCGTCTTACTTGGTTCAGAGTTTTGTTGTTCAAC-AATAACTGCTT------- 189
consensus_8744#2      ATCATCACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATC 169
                       * *   *    *   *    *      **       **** ******    *       

consensus_8744#0      -CTTCTTCACT----TATACCATCTTCACATTCATCTGAATCGGAAGCATCTTGTGGTAC 287
consensus_8744#1      -CTTCTTNACT----TATACCATCTTNACATTCATATGAATTCGGTGTGCCGAATTGCA- 243
consensus_8744#2      ATTTCCCAAATCAAATATGCGATATCGATATCCTACAGACCCCCTCGGACCGAATCTGGC 229
                        ***   * *    *** * ** *  * ** *    **       *   *   *     

consensus_8744#0      AGAGTATATGCGAAGTACAGGCTTATTAGGATCCTTCAACATTAGATATTTGCCTTCAGG 347
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      CTG--------------------------------------------------------- 232
                                                                                  

consensus_8744#0      CATTTTCATGAAGAAATCAACGACACATCGCAGTATACCCCAAGCATTATCCATATTTAA 407
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      ATTCAGCTGATTGGCGAACTCAGATGGTTTGAACTGTTGTGTGCCCAATATGACATGGCG 467
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      AGATGAGTCACGGGGGTTGACACGAGAAACAAATCCTAATTTTAGTTGATCTGCACCTGA 527
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      CAGTATACTACAGACAGTCCATCCAGCTAATTTAAAGGCATTATTCTTTATCTCAGCGGC 587
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      CAAAACAGCCCCCCGTTGAGTATCAAGTTCCGACGGCCAATCGACACCACCGCAATAGCG 647
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      TGAATCAAATTCATTTAGCGCGCGTATACATACGAATTGTGGAGTGGCTGGCTGATCATC 707
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      ACTAGTTGGTTGAAGTACACCATTCACCTCGCAACGAATAACCATCTGAACATCATTTCC 767
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      CAAATCAAATATGCGATATCGATATCCTACAGAACCTAATTCTTCTTTACCACCTTCGTG 827
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      ATTTTTATTTTGAGATGGATTTGGACTATCCTCATCCTCCTCTTCATCATCTTTGAAAGG 887
consensus_8744#1      ------------------------------------------------------------
consensus_8744#2      ------------------------------------------------------------
                                                                                  

consensus_8744#0      ATTTTCTTCAGGG 900
consensus_8744#1      -------------
consensus_8744#2      -------------