These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 683 fasta sequence [TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATTAGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC] [+] EMBL CD114884 [TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATTAGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACAT ] [-] EMBL CD114858 [ ATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCATCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC] [-] EMBL CD115025 [ ATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTCTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC] [+] EMBL BG932410 [ CAAAAAACTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCccct ] consensusID : consensus_8745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 534 fasta sequence [AGATCTCGTTGTGCATATTTTTACATCGAAGCAGGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTC-TTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTTCAC] [+] EMBL CD145920 [AGATCTCGTTGTGCATATTTTTACATCGAAGCAGGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGA ] [-] EMBL CD202498 [ AGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTANAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTC TTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTTCAC] [-] EMBL CD201084 [ CCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8745#0 TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATT 60 consensus_8745#1 ------------------------------------------------------------ consensus_8745#0 AGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAAT 120 consensus_8745#1 ------------------------------------------------------------ consensus_8745#0 AGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGA 180 consensus_8745#1 -------------------AGATCTCGTTGTGCATATTTTTACATCGAAGCAG-GGTAGA 40 * * *** ** * * ** ** * ****** consensus_8745#0 ATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAA 240 consensus_8745#1 ATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAA 100 ************************************************************ consensus_8745#0 ATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCAT 300 consensus_8745#1 ATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCAT 160 ************************************************************ consensus_8745#0 ACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTT 360 consensus_8745#1 ACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTT 220 ******************************************************** *** consensus_8745#0 GCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACAC 420 consensus_8745#1 GCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACAC 280 ************************************************************ consensus_8745#0 GTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACT 480 consensus_8745#1 GTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCG--- 337 ********************************************************* consensus_8745#0 GATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATT 540 consensus_8745#1 ------------------------------------------------------------ consensus_8745#0 TTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCA 600 consensus_8745#1 -------GCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCA 390 ***************************************************** consensus_8745#0 ATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTG 660 consensus_8745#1 ATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTG 450 ************************************************************ consensus_8745#0 CATTTGGTTGGTTCTTTTTTGTC------------------------------------- 683 consensus_8745#1 CATTTGGTTGGTTCTTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTAT 510 *********************** consensus_8745#0 ------------------------ consensus_8745#1 TTCGCAGTCATTTATGCTGTTCAC 534 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||