These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1199 fasta sequence [AGCTTGCAACCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG-GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG-AAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTGTTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGAAGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGTGTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATACCTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTCATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTGTTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGATGAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGTTTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAGTAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG] [+] EMBL CD147647 [AGCTTGCAACCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGGAAAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTT ] [+] EMBL CD144120 [ ggagCCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCANAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGC ] [+] EMBL CD083931 [ CATTTGTCATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAATATTTCAATCAACCGTTTCGTTCGTCATATCTGTTCTCTTTATGACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG AAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGG ] [+] EMBL CD168123 [ TGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG AAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTGTTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGAAGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGTGTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATACCTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTCATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTGTTCTGTTCTTTCATT ] [-] EMBL BF440146 [ TGTCCGTGTCGGTGATGTT TT GTGACAAGNGGAACAAAGTACT GATTTAT GTCATTT GTCCCTTCTGAGAGTTTTGGTGA TTTTCAGATTCTGTCGAAACTCGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTAC TTACTCACTTTTGTAATTTCTTTCCTTGTTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGATGAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGTTTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAGTAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG] consensusID : consensus_8773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACAGAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGATTAGCTTTTAAAGCACATCAACACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGTTCACCACTCCTAAACAAAAAAAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGTATCCCTGAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAGAAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCATAAAATTAAAATACGGGCCATGAACCATATATTTTATGAATTTTCACTGAACATTTTCTTCATCAATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA] [+] EMBL CD194600 [AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACAGAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGATTAGCTTTTAAAGCACATCAACACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGTTCACCACTCCTAAACAAAAAAAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGTATCCCTGAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAGAAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCATAAAATTAAAATACGGGCCATGAACCATATATTTTATGAATTTTCACTGAACATTTTCTTCATCAATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA] consensusID : consensus_8773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TCGAGCTTGCAACCGGTGCATAATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCATGCGGCTTGTAATTGGTTTTCAGTAGCAGAACTAATATGTACTGTCTTATTCCAGCTACATTTTTCACTCCATAAGTCATGTATTAGTCTCTTGAGAGGATATAGATATGGCGTGAACGTTTTGGGTGGTATCAGTGTTTCTAACTTCCT] [+] EMBL CD200380 [TCGAGCTTGCAACCGGTGCATAATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCATGCGGCTTGTAATTGGTTTTCAGTAGCAGAACTAATATGTACTGTCTTATTCCAGCTACATTTTTCACTCCATAAGTCATGTATTAGTCTCTTGAGAGGATATAGATATGGCGTGAACGTTTTGGGTGGTATCAGTGTTTCTAACTTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8773#0 -----------------------------------------AGCTTGCAACCGGTGCATA 19 consensus_8773#2 --------------------------------------TCGAGCTTGCAACCGGTGCATA 22 consensus_8773#1 AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACA 60 * * * * consensus_8773#0 ATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAA 79 consensus_8773#2 ATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAA 82 consensus_8773#1 GAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGAT-TAGCTTTTAAAGCA--CATCAA 117 ** **** * ** *** * ** * ** * * * *** ** consensus_8773#0 TATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACC--TCTTGTATAGCAC 137 consensus_8773#2 TATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACC--TCTTGTATAGCAC 140 consensus_8773#1 CACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGT-TCACCACTCCTAAACAAAAA 176 * * * * * * ** * * * * ** ***** ** * * * * consensus_8773#0 TATTGCTTTCTATATATCAAAGTCCAGC-AATCTTTCCT--AGTTTACTTTTGCGAAGAT 194 consensus_8773#2 TATTGCTTTCTATATATCAAAGTCCAGC-AATCATGC----GGCTTGTAATTG----GTT 191 consensus_8773#1 AAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGT 236 * ** * * ** * ** * *** * * * * * * consensus_8773#0 TTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAAC--ATTATTTGCTTTGGG 252 consensus_8773#2 TTCAGTAGCAGAACTAATATGTACTGTCTTATTCCA--GCTAC--ATTTTTCACTCCA-- 245 consensus_8773#1 ATCCCT-GAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAG 295 ** * * * ** * * ** ** ** consensus_8773#0 T---TTAGCTGTGG-GTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAG 308 consensus_8773#2 ----TAAGTCAT---GTATTA----GTCTCTTGAGAGGATATAGATATGGCG--TGAACG 292 consensus_8773#1 AAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCA-TAAAATT 354 * * ** **** * * * ** * ** consensus_8773#0 CTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGC 368 consensus_8773#2 TT-TTGGGTGGTATCAG-TGTTTCTAACTTCCT--------------------------- 323 consensus_8773#1 AAAATACGGGCCATGAACCATATAT---TTTATGAATTTTCACTGAACATTTTCTTCATC 411 * * ** * * * * consensus_8773#0 GAAAAGATGTAGGGGAAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAA 428 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 AATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA--------- 462 consensus_8773#0 ATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTG 488 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGA 548 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGT 608 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 GTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATAC 668 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 CTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTC 728 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 ATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGG 788 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTA 848 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAA 908 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTG 968 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGAT 1028 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 GAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGT 1088 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAG 1148 consensus_8773#2 ------------------------------------------------------------ consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG 1199 consensus_8773#2 --------------------------------------------------- consensus_8773#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||