These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 695 fasta sequence [CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA-AAGATTA] [+] EMBL CD115894 [CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATCCTGGTCACGATCGGAAGGCTGGAGAGTCTTCATAGCACTCTACTTTATTATCTTGAAAACTTCTCGCGAGTTAAGCGCTCGTTTTTCTGATGTTGCTNGAGAGCTTGCCGAGGGATTTCTTGGGGACTCTCGCTTCT ] [+] EMBL CD115900 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGATAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA AAGATTA] [+] EMBL CD115566 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTCTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGANNACAGTTCGGTCAGCANAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTT ACATCTCTGTATCAGTGGCGGNGGGAGGGTAAGACTGTTGATGAAGTACTGAGAANAAGATa ] [+] EMBL CD115863 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTACTAGACATGAAAGGTGCTCTGGATCTACTTATTGGT ] [+] EMBL CD115787 [ TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTGCATTGAGGAAGACTCACAATGCGGAAAT ] consensusID : consensus_8787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT] [+] EMBL CD158683 [GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAG ] [+] EMBL CD160573 [ ccccctgctGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAGACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8787#0 CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 60 consensus_8787#1 -----------------------GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 37 ************************************* consensus_8787#0 TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAG----------TCTTCA 110 consensus_8787#1 TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCA 97 ******************************************** ****** consensus_8787#0 AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATA 170 consensus_8787#1 AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATG 157 *********************************************************** consensus_8787#0 TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTA 230 consensus_8787#1 TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTA 217 *********************************** ************************ consensus_8787#0 CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 290 consensus_8787#1 CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 277 ************************************************************ consensus_8787#0 TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 350 consensus_8787#1 TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 337 ************************************************************ consensus_8787#0 CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 410 consensus_8787#1 CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 397 ************************************************************ consensus_8787#0 GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 470 consensus_8787#1 GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 457 ************************************************************ consensus_8787#0 TAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATT 530 consensus_8787#1 TAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATT 517 **** ********************** ******************************** consensus_8787#0 CAAACGTAATTCTAATCTTATGCGTCCTTAAGATA----CTGAAAACAGTTCGGTCAGCA 586 consensus_8787#1 CAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCA 577 ********************************* * **** **************** consensus_8787#0 AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATC 646 consensus_8787#1 AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT------- 630 ***************************************************** consensus_8787#0 AGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAAAAGATTA 695 consensus_8787#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||