These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATANTTGT-TGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG] [+] EMBL CD085478 [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATANTTGT TGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG] [+] EMBL CD085473 [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATA TTGTCTGGGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGGTAAATATCTA ] consensusID : consensus_8822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 566 fasta sequence [ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATG-ATGGAGA-ACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT] [-] EMBL CD200736 [ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCT ] [-] EMBL CD180800 [ TCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCGGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCA ] [+] EMBL CD134400 [ atcacatcaCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATG ATGGAGA ACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT] [+] EMBL CD171255 [ TGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGACCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGAATGGAGATACAAGGAGGAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTC ] consensusID : consensus_8822#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence [ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA] [+] EMBL CD072500 [ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8822#0 ---------------------------------------------------GTGATAGTG 9 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGA 60 consensus_8822#0 GTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAG 69 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 TTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGG 120 consensus_8822#0 GAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGC 129 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 GGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTA---CTAAAGGTGAGC 177 consensus_8822#0 ACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGC 189 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 -CTGGACCTGCCGGTGAA----CCTGGA-ACTGAAGGAGATGAAGGAGACCCAGGTATTC 231 consensus_8822#0 CGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTG 249 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 CTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTG 291 consensus_8822#0 GAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAG 309 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 GAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAG 351 consensus_8822#0 ATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAG 369 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 ATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAG 411 consensus_8822#0 AAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTG 429 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 AAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTG 471 consensus_8822#0 GACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAG 489 consensus_8822#2 --------------ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAG 46 consensus_8822#1 GACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAG 531 *************** *** ** *********** ******** consensus_8822#0 ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTA 549 consensus_8822#2 ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA------------------- 87 consensus_8822#1 ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT------------------------- 566 *********************************** consensus_8822#0 ACATANTTGTTGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCA 609 consensus_8822#2 ------------------------------------------------------------ consensus_8822#1 ------------------------------------------------------------ consensus_8822#0 CTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG 658 consensus_8822#2 ------------------------------------------------- consensus_8822#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||