These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1128 fasta sequence [AGAAGTTATGTTGTTATTCAAAGATGTTTTTGATGATGAAGTGATTTTTAAATAATCCAAGTGTGTAAGATGAGWWCCTATTTTGATGAATGACCAGTGGATTTCTGTATTGGACCATTATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTWTTATCATCCTTTGAAATACATGGATTGATAGATGTTAAAGATATTGTATCAGATTTAGCAATTTGAGACCATGAAAGTGAAGTTTTTGTTGATAGTGGAGCTGCTTCAGCTGCT-ATCAATACAGCAACTTGTTCAGACATTAATGCATCATGATATTTTCCTTTTGCCTCTTCAGCGGCTTGAGCAGCTTGAATTGATCGTAAATCTATTGGAGCAGCCTTGTTTGTGATATTTATATTACTAGTAGCAGCTGCCGCCCATCGTGCAGATTCAGGCAACTTTAACTGAGCTAATTCACTATCTGCTTTCAGACGTGATATTTCACGTTTACGCTGTTCAATAAGAGTGCGATTTTTTTCCTGTACAGCTAAAGCTTTTTCTGCAGCTATGGCCATTGCCTCTTCTTCGGCCAACTTCTTTAATCTTTCTTCTTCAGCTAATGATTGTTCTAATGAGGCAGCTTTACGACGATTGAATTCTGACTCCCAAGCTAATTGACGTACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATTTTTACGTTTAGATTTCTTTGTAGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGATACGGCAATGTCACATTCAGGAATTGATTTTTCTATCGATTGAAATTGTTGATGCTTTTTATCATTATCGTTATCATCATCATCAGCAGCAACATTGTTGTTACCAACATGTGCATTATTATTTGTATGCTTATTAGGTTCATGATTGTTAATTGTTGAATCTAAGGGATGTTCATTATCAAGTATTGTTAGAGTAGATAATGATTTTGTAAGTTCTATTCCTAAAGATGGTAATGTTGAGGGTTTCGATGACGAATTAACAGTTGTACCGTTACTATGATCATTAAGAATAGGTGAAATGATGTCATTATCAGTTTTGATATTATTATTCGAACCGTCGTCAAGAGTATTGGAGAAG] [+] EMBL BE519463 [AGAAGTTATGTTGTTATTCAAAGATGTTTTTGATGATGAAGTGATTTTTAAATAATCCAAGTGTGTAAGATGAGWWCCTATTTTGATGAATGACCAGTGGATTTCTGTATTGGACCATTATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTWTTATCATCCTTTGAAATACATGGATTGATAGATGTTAAAGATATTGTATCAGATTTAGCAATTTGAGACCATGAAAGTGAAGTTTTTGTTGATAGTGGAGCTGCTTCAGCTGCTAATCAA ] [+] EMBL CD129938 [ TGTTAAAGATATTGTATCAGATTTAGCAATTTGAGACCATGAAAGTGAAGTTTTTGTTGATAGTGGAGCTGCTTCAGCTGCT ATCAATACAGCAACTTGTTCAGACATTAATGCATCATGATATTTTCCTTTTGCCTCTTCAGCGGCTTGAGCAGCTTGAATTGATCGTAAATCTATTGGAGCAGCCTTGTTTGTGATATTTATATTACTAGTAGCAGCTGCCGCCCATCGTGCAGATTCAGGCAACTTTAACTGAGCTAATTCACTATCTGCTTTCAGACGTGATATTTCACGTTTACGCTGTTCAATAAGAGTGCGATTTTTTTCCTGTACAGCTAAAGCTTTTTCTGCAGCTATGGCCATTGCCTCTTCTTCGGCCAACTTCTTTAATCTTTCTTCTTCAGCTAATGATTGTTCTAATGAGGCAGCTTTACGACGATTGAATTCTGACTCCCAAGCTAATTGACGTACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATTTTTACGTTTAGATTTCTTTGTAGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGATACGGCAATGTCACATTCAGGAATTGATTNTTCTATCGATTGNAATTGTTGATGCTTTTTA ] [-] EMBL CD131421 [ CTGCTTCAGCTGCT ATCAATACAGCAACTTGTTCAGACATTAATGCATCATGATATTTTCCTTTTGCCTCTTCAGCGGCTTGAGCAGCTTGAATTGATCGTAAATCTATTGGAGCAGCCTTGTTTGTGATATTTATATTACTAGTAGCAGCCGCCGCCCATCGTGCAGATTCAGGCAACTTTAACTGAGCTAATTCACTATCTGCTTTCAGACGTGATATTTCAC ] [-] EMBL AI975580 [ CAGCAACTTGTTCAGACATTAATGCATCATGATATTTTCCTTNTGCCTCTTCAGCGGCTTGAGCAGCTTGAATTGATCGTAAATCTATTGGAGCAGCCTTGTTTGTGATATTTATATTACTAGTAGCAGCCGCCGCCCATCGTGCAGATTCAGGCAACTTTAGCTGAGCTCATTCATTATCTGCTTTCAGACGTGATATTTCACGTTTACGCTGTTCAATAAGAGTGCGATTTTTTTCCTGTACAGCTAAAGCTTTTTCTGCAGCTATGGCCATTGCCTCTTCTCAGGCCAACTTCTTTAATCTTTCTTCTTCAGCTAATGATTGTTCTAATGAGGCAGCTTTACGACGATTGAATTCTGACTCCCAAGCTAATTGACGTACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATTTTTACGTTTAGATTTCTTTGTAGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGATACGGCAATGTCACATTCA ] [-] EMBL AW017214 [ TTACTAGTAGCAGCTGCCGCCCATCGTGCAGATTCAGGCAACTTTAACTGAGCTAATTCACTATCTGCTTTCAGACGTGATATTTCACGTTTACGCTGTTCAATAAGAGTGCGATTTTTTTCCTGTACAGCTAAAGCTTTTTCTGCAGCTATGGCCATTGCCTCTTCTTCGGCCAACTTCTTTAATCTTTCTTCTTCAGCTAATGATTGTTCTAATGAGGCAGCTTTACGACGATTGAATTCTGACTCCCAAGCTAATTGACGTACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATTTTTACGTTTAGATTTCTTTGTAGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGATACGGCAATGTCACATTCAGGAATTGATTTTTCTATCGATTGAAATTGTTGATGCTTTTTATCATTATCGTTATCATCATCATCAGCAGCAACATTGTTGTTACCAACATGTGCATTATTATTTGTATGCTTATTAGGTTCATGATTGTTAATTGTTGAATCTAAGGGATGTTCATTATCAAGTATTGTTAGAGTAGATAATG ] [+] EMBL CD150356 [ TACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATTTTTACGTTTAGATTTCTTTGTGGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGATACGGCAATGTCACATTCAGGAATTGATTTTTCTATCGATTGAAATTGTTGATGCTTTTTATCATTATCGTTATCATCATCATCAGCAGCAACATTGTTGTTACCAACATGTGCATTATTATATGTATGCTTATTAGGTTCATGATTGTTAATTGTTGAATCTAAGGGATGTTCATTATCAAGTATTGTTAGAGTAGATAATGATTTTGTAAGTTCTATTCCTAAAGATGGTAATGTTGAGGGTTTCGATGACGAATTAACAGTTGTACCGTTACTATGATCATTAAGAATAGGTGAAATGATGTCATTATCAGTTTTGATATTATTATTCGAACCGTCGTCAAGAGTATTGGAGAAG] consensusID : consensus_8831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [AGAAGTTATGTTGTTATTCAAAGATGTTTTTTGATGATGAAGTGATTTTTAAATAATCCAATTGTGTAAAGATGAGANNNNNATTGATGAATGACCAGTGGATTTCTGTATTGGACCATTATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTTTTATCATCCTTTGAAATACATKGGATTGATWGATGTTAAWGATATTGTAATCAGATTTADCAATTTGAGACCATGKAAGTGTAAGTTTTTKGTTGAATRGTGGRGCCTGCCTTCAGCTGCCTATCAAT] [+] EMBL BE519459 [AGAAGTTATGTTGTTATTCAAAGATGTTTTTTGATGATGAAGTGATTTTTAAATAATCCAATTGTGTAAAGATGAGANNNNNATTGATGAATGACCAGTGGATTTCTGTATTGGACCATTATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTTTTATCATCCTTTGAAATACATKGGATTGATWGATGTTAAWGATATTGTAATCAGATTTADCAATTTGAGACCATGKAAGTGTAAGTTTTTKGTTGAATRGTGGRGCCTGCCTTCAGCTGCCTATCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8831#0 AGAAGTTATGTTGTTATTCAAAGATGTTTTT-GATGATGAAGTGATTTTTAAATAATCCA 59 consensus_8831#1 AGAAGTTATGTTGTTATTCAAAGATGTTTTTTGATGATGAAGTGATTTTTAAATAATCCA 60 ******************************* **************************** consensus_8831#0 AGTGTGTAA-GATGAGWWCCTATTTTGATGAATGACCAGTGGATTTCTGTATTGGACCAT 118 consensus_8831#1 ATTGTGTAAAGATGAGANNNNNATT-GATGAATGACCAGTGGATTTCTGTATTGGACCAT 119 * ******* ****** ** ********************************** consensus_8831#0 TATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTWTTATCAT 178 consensus_8831#1 TATTATTACTATTAGATGATATAACAACAGCACACTTAGAACGTTCAGTTGTTTTATCAT 179 **************************************************** ******* consensus_8831#0 CCTTTGAAATACATGG-ATTGATAGATGTTAAAGATATTGTA-TCAGATTTAGCAATTTG 236 consensus_8831#1 CCTTTGAAATACATKGGATTGATWGATGTTAAWGATATTGTAATCAGATTTADCAATTTG 239 ************** * ****** ******** ********* ********* ******* consensus_8831#0 AGACCATGAAAGTG-AAGTTTTTGTT--GATAGTGGAGCTG--CTTCAGCTGC-TATCAA 290 consensus_8831#1 AGACCATGKAAGTGTAAGTTTTTKGTTGAATRGTGGRGCCTGCCTTCAGCTGCCTATCAA 299 ******** ***** ******** * ** **** ** ********** ****** consensus_8831#0 TACAGCAACTTGTTCAGACATTAATGCATCATGATATTTTCCTTTTGCCTCTTCAGCGGC 350 consensus_8831#1 T----------------------------------------------------------- 300 * consensus_8831#0 TTGAGCAGCTTGAATTGATCGTAAATCTATTGGAGCAGCCTTGTTTGTGATATTTATATT 410 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 ACTAGTAGCAGCTGCCGCCCATCGTGCAGATTCAGGCAACTTTAACTGAGCTAATTCACT 470 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 ATCTGCTTTCAGACGTGATATTTCACGTTTACGCTGTTCAATAAGAGTGCGATTTTTTTC 530 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 CTGTACAGCTAAAGCTTTTTCTGCAGCTATGGCCATTGCCTCTTCTTCGGCCAACTTCTT 590 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 TAATCTTTCTTCTTCAGCTAATGATTGTTCTAATGAGGCAGCTTTACGACGATTGAATTC 650 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 TGACTCCCAAGCTAATTGACGTACTTCATCTGCTGTTAATTTTTTATTCGTTTTCTTATT 710 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 TTTACGTTTAGATTTCTTTGTAGTTGTTAATGTTTCCTGTTCATTATTTGAAGTCAATGA 770 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 TACGGCAATGTCACATTCAGGAATTGATTTTTCTATCGATTGAAATTGTTGATGCTTTTT 830 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 ATCATTATCGTTATCATCATCATCAGCAGCAACATTGTTGTTACCAACATGTGCATTATT 890 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 ATTTGTATGCTTATTAGGTTCATGATTGTTAATTGTTGAATCTAAGGGATGTTCATTATC 950 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 AAGTATTGTTAGAGTAGATAATGATTTTGTAAGTTCTATTCCTAAAGATGGTAATGTTGA 1010 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 GGGTTTCGATGACGAATTAACAGTTGTACCGTTACTATGATCATTAAGAATAGGTGAAAT 1070 consensus_8831#1 ------------------------------------------------------------ consensus_8831#0 GATGTCATTATCAGTTTTGATATTATTATTCGAACCGTCGTCAAGAGTATTGGAGAAG 1128 consensus_8831#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||