These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence [CTGAAGAATGGTTAAAGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGAAATATCTTTTAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTCTACTCGACACACTTTTGGACACTTCATTTCTACCCTTAGTTGTTGGTCAGAAGAACCACTG-AAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAACCAAATTGTTTCGAATTAATACTGTA-TATGGAAAATTTACTTATAATAATTAAAGCTTAGATTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCTTG] [+] EMBL CD083084 [CTGAAGAATGGTTAAAGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGAAATATCTTTTAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTCTACTCGACACACTTTTGGACACTTCATTTCTACCCTTAGTTGTTGGTCAGAAGAACCACTG AAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAACCAAATTGTTTCGAATTAATACTGTA TATGGAAAATTTACTTATAATAATTAAAGCTTAGATTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCT ] [-] EMBL CD076658 [ AGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTTTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTATAAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTTTACTCGACACACTTTTGAACACTTCATTTCTACCTTTAGTTGTTGTTCAGAAGAACCA TGAAAGCCCTACGATCAAACCGTCCAGTTCGGAGAACAAAACCCCACCAAAATGGTTCGAATTAATACTGTATTAT GAAAATTTACTTATAATAATTAAAGCTAAGAATTCAATTTCTATATTTATACTGAAATTATATTATAATAAAtcactg] consensusID : consensus_8851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGACTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATATTCTATTTCTGTGTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATNTAAAAATCCATTTAATTG] [+] EMBL CD137820 [ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGACTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATATTCTATTTCTGTGTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATNTAAAAATCCATTTAATTG] consensusID : consensus_8851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [CCTCGAGGCCAAAAATTTGGCACGAGGTGGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAAT] [+] EMBL CD079504 [CCTCGAGGCCAAAAATTTGGCACGAGGTGGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAA ] [-] EMBL CD073773 [ GGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGGATCAGAGAAACAAGA AAAGAAATAAT] consensusID : consensus_8851#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence [GGTATTATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAGGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAA-CAAGATTCCAGCGTACAGTGAACTTAGT-CAAGATCTACCCAATCATGGCA-CGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCTTTACAGTGTTAAAAAAAAAAAAAAAAAA] [+] EMBL CD127750 [GGTATTATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAGGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAA CAAGATTCCAGCGTACAGTGAACTTAGT CAAGATCTACCCAATCATGGCA CGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACA ] [-] EMBL AI395221 [ CATAAACCAAG TTCCAGCGTACAGTGAACTT GTCCAAGATCTACCCAATCATGGCACCGC TCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCTTTACAGTGTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8851#2 ------------------------------------------------------------ consensus_8851#3 ------------------------------------------------------------ consensus_8851#1 ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGC 60 consensus_8851#0 ---------------------------------------------CTGAAGAATGGTTAA 15 consensus_8851#2 ------------------------------------------------------------ consensus_8851#3 ------------------------------------------------------------ consensus_8851#1 GTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCT 120 consensus_8851#0 AGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGAC 75 consensus_8851#2 ------------------------------------------------------------ consensus_8851#3 ----------------------------------------GGTATTATTTCGCACAGCGT 20 consensus_8851#1 GAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGA 180 consensus_8851#0 CACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGT 135 consensus_8851#2 --CCTCGAGGCCAAAAATTTGGCACGA---GGTGGATGTTTGCAAAGCATTACGGAAGGA 55 consensus_8851#3 GTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGA 80 consensus_8851#1 CTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATAT 240 consensus_8851#0 GTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGA 195 * * * * ** * * *** * * * ** consensus_8851#2 AGAA---TCTG----------ACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 98 consensus_8851#3 GGAA---TCTG----------ACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 123 consensus_8851#1 TCTA---TTTCTGT-------GTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTA 290 consensus_8851#0 AGAAATATCTTTTAGAATCTGACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 251 * * * **** * ************************ consensus_8851#2 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 158 consensus_8851#3 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 183 consensus_8851#1 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 350 consensus_8851#0 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 311 ************************************************************ consensus_8851#2 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 218 consensus_8851#3 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 243 consensus_8851#1 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 410 consensus_8851#0 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 371 ************************************************************ consensus_8851#2 TTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATC 278 consensus_8851#3 TTGTTGG----------------------------------------------------- 250 consensus_8851#1 TTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATC 470 consensus_8851#0 TTGTTGG----------------------------------------------------- 378 ******* consensus_8851#2 ATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 338 consensus_8851#3 ---------------------ACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 289 consensus_8851#1 ATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGT 530 consensus_8851#0 ---------------------ACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 417 ******************************* ******* consensus_8851#2 TCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAA--AATC 396 consensus_8851#3 TCTCTGAATCCGAATTGCAAGAA------------------------------------- 312 consensus_8851#1 TCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGAT------------ 578 consensus_8851#0 TCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATT 477 *********************** consensus_8851#2 CATTTAATTGTCGTAGATTGATGAAACATGGAGT----TGGGACTTTTTGTTCTCTGAAT 452 consensus_8851#3 ----------------ATTGATGAAACATGGAGT----TGGGACTTTTTGTTCTCTGAAT 352 consensus_8851#1 -----------------NTAAAAATCCATTTAAT----TG-------------------- 597 consensus_8851#0 AACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGA 537 * * * * * * consensus_8851#2 TAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCG 512 consensus_8851#3 TAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCG 412 consensus_8851#1 ------------------------------------------------------------ consensus_8851#0 TGTCAACATTTTTCTACTCGACACA-CTTTTGGACACTTCATTTCTACCCTTAGTTGTTG 596 consensus_8851#2 TTTTAATAAATC--TAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAAT------- 563 consensus_8851#3 TTTTAATAAATC--TAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCT 470 consensus_8851#1 ------------------------------------------------------------ consensus_8851#0 GTCAGAAGAACCACTGAAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAAC 656 consensus_8851#2 ------------------------------------------------------------ consensus_8851#3 TTACAGTGTTAAAAAAAAAAAAAAAAAA-------------------------------- 498 consensus_8851#1 ------------------------------------------------------------ consensus_8851#0 CAAATTGTTTCGAATTAATACTGTATATGGAAAATTTACTTATAATAATTAAAGCTTAGA 716 consensus_8851#2 ----------------------------------------------- consensus_8851#3 ----------------------------------------------- consensus_8851#1 ----------------------------------------------- consensus_8851#0 TTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCTTG 763 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||