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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence
[GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT]
[+] EMBL CD128154 [GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATG ]
[-] EMBL CD190459 [ TCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGGGCGGGGGTGTAATTTAGTAAGATCATCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATTGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGTCCATACTTATTTATTCGAGCACGTAATCCACTCCAAgaagc ]
[-] EMBL CD201409 [ CCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT]
[-] EMBL CD071945 [ AGCCGCTTCTGGACTATCAAA GGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAA ]
consensusID : consensus_8857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 454 fasta sequence
[AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG-CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA]
[-] EMBL CD190691 [AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA]
[+] EMBL CD138515 [ CTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGNCCAAA TACAGACAGCTG ]
consensusID : consensus_8857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT]
[-] EMBL CD131471 [TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8857#0 GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAA 60
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 TCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAA 120
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 TAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAG 180
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 TAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAG 240
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 AAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTG 300
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 -------------------------------------------AAAGGTAACATCAATGA 17
consensus_8857#0 ATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAG 360
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 CCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACG 77
consensus_8857#0 CACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCC 420
consensus_8857#2 -----------------------------------------TCCTCTGTATTAACACCCC 19
consensus_8857#1 TAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTG 137
** ** *** *
consensus_8857#0 ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 478
consensus_8857#2 ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 77
consensus_8857#1 TTTCGTCTGGT-GAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAAT-TGT 195
** *** **** **** * ** * * * * *** * * ** ***
consensus_8857#0 CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAA 538
consensus_8857#2 CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAA 137
consensus_8857#1 GCCTAGAT--GCTGGTGATTTGATTTACGATTGCAAGAATCCTT-GTACAACATGAATGG 252
*** * * * * * * * * *** * ** * * ***** *
consensus_8857#0 TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 596
consensus_8857#2 TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 195
consensus_8857#1 ATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAA 312
* * * * * ** * ** * * * * ** * * *** * * ***
consensus_8857#0 AATGCATCTGCCAGACCTTGAACCCCAATACCAATCG-GCCGATG-ACGCATGTTTGATC 654
consensus_8857#2 AATGCATCTGCCAGC-------------TAGCGGTTG-ACCAAGGGACATATGAATCATA 241
consensus_8857#1 AATTTGTCCTACAAC----TACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACA 368
*** ** ** * * * ** *
consensus_8857#0 TGCGA------GCCTCTTCAACTGGATAAAAGGTAACATCAA--TGACC------TTGTT 700
consensus_8857#2 T-CAA------GGTTCTCCTGTCAG-TAAGGGTATACTTCAACCTGATA------TGGGG 287
consensus_8857#1 TGCAACAGAGCGATTGTTGCATCCA-TTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAA 427
* * * * * * * *** *** *
consensus_8857#0 TAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATT 760
consensus_8857#2 GGTGTTT----------------------------------------------------- 294
consensus_8857#1 AATAATTACGTACGCTTTATCATAAAA--------------------------------- 454
**
consensus_8857#0 ATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTC 820
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 TGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATG 880
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 CTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTC 940
consensus_8857#2 ------------------------------------------------------------
consensus_8857#1 ------------------------------------------------------------
consensus_8857#0 AATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT 982
consensus_8857#2 ------------------------------------------
consensus_8857#1 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||