These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence [GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT] [+] EMBL CD128154 [GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATG ] [-] EMBL CD190459 [ TCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGGGCGGGGGTGTAATTTAGTAAGATCATCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATTGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGTCCATACTTATTTATTCGAGCACGTAATCCACTCCAAgaagc ] [-] EMBL CD201409 [ CCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT] [-] EMBL CD071945 [ AGCCGCTTCTGGACTATCAAA GGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAA ] consensusID : consensus_8857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 454 fasta sequence [AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG-CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA] [-] EMBL CD190691 [AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA] [+] EMBL CD138515 [ CTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGNCCAAA TACAGACAGCTG ] consensusID : consensus_8857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT] [-] EMBL CD131471 [TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8857#0 GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAA 60 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 TCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAA 120 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 TAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAG 180 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 TAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAG 240 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 AAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTG 300 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 -------------------------------------------AAAGGTAACATCAATGA 17 consensus_8857#0 ATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAG 360 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 CCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACG 77 consensus_8857#0 CACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCC 420 consensus_8857#2 -----------------------------------------TCCTCTGTATTAACACCCC 19 consensus_8857#1 TAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTG 137 ** ** *** * consensus_8857#0 ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 478 consensus_8857#2 ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 77 consensus_8857#1 TTTCGTCTGGT-GAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAAT-TGT 195 ** *** **** **** * ** * * * * *** * * ** *** consensus_8857#0 CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAA 538 consensus_8857#2 CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAA 137 consensus_8857#1 GCCTAGAT--GCTGGTGATTTGATTTACGATTGCAAGAATCCTT-GTACAACATGAATGG 252 *** * * * * * * * * *** * ** * * ***** * consensus_8857#0 TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 596 consensus_8857#2 TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 195 consensus_8857#1 ATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAA 312 * * * * * ** * ** * * * * ** * * *** * * *** consensus_8857#0 AATGCATCTGCCAGACCTTGAACCCCAATACCAATCG-GCCGATG-ACGCATGTTTGATC 654 consensus_8857#2 AATGCATCTGCCAGC-------------TAGCGGTTG-ACCAAGGGACATATGAATCATA 241 consensus_8857#1 AATTTGTCCTACAAC----TACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACA 368 *** ** ** * * * ** * consensus_8857#0 TGCGA------GCCTCTTCAACTGGATAAAAGGTAACATCAA--TGACC------TTGTT 700 consensus_8857#2 T-CAA------GGTTCTCCTGTCAG-TAAGGGTATACTTCAACCTGATA------TGGGG 287 consensus_8857#1 TGCAACAGAGCGATTGTTGCATCCA-TTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAA 427 * * * * * * * *** *** * consensus_8857#0 TAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATT 760 consensus_8857#2 GGTGTTT----------------------------------------------------- 294 consensus_8857#1 AATAATTACGTACGCTTTATCATAAAA--------------------------------- 454 ** consensus_8857#0 ATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTC 820 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 TGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATG 880 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 CTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTC 940 consensus_8857#2 ------------------------------------------------------------ consensus_8857#1 ------------------------------------------------------------ consensus_8857#0 AATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT 982 consensus_8857#2 ------------------------------------------ consensus_8857#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||