These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 646 fasta sequence [TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCCCTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCACCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCCGTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATATGGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGAGTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAATTCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA] [+] EMBL CD170667 [TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCCCTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCACCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCCGTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTCTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTA ] [-] EMBL CD119684 [ CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCGTCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCTGGATGGACAAGCAGGGACAGCTGTCTGTATTTC TTTCTTATATCAGCCATTGAAGCtgc ] [-] EMBL CD146344 [ CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTT ] [+] EMBL CD146338 [ TTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTT ] [-] EMBL CD190484 [ TTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTC TTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATA ] [-] EMBL CD141967 [ ATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATATGGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGAGTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAATTCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA] consensusID : consensus_8867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTCTGTATTCTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC] [-] EMBL CD119703 [CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTCTGTATTCTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8867#0 TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCC 60 consensus_8867#1 ------------------------------------------------------------ consensus_8867#0 CTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCA 120 consensus_8867#1 ------------------------------------------------------------ consensus_8867#0 CCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCC 180 consensus_8867#1 ------------------------------------------------------------ consensus_8867#0 GTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTTTTC 240 consensus_8867#1 -----------------------------------CCAGTCGTCTTTTTAATACGTTTTC 25 ************************* consensus_8867#0 GTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACT 300 consensus_8867#1 GTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACT 85 ****************************************** ***************** consensus_8867#0 TGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTT 360 consensus_8867#1 TGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTT 145 ************************************************************ consensus_8867#0 TCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTC 420 consensus_8867#1 TCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTC 205 *************************************** ******************** consensus_8867#0 TGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATAT 480 consensus_8867#1 TGTATT--CTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC------- 256 ****** ******************** * ***** ** * * * * consensus_8867#0 GGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGA 540 consensus_8867#1 ------------------------------------------------------------ consensus_8867#0 GTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAAT 600 consensus_8867#1 ------------------------------------------------------------ consensus_8867#0 TCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA 646 consensus_8867#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||