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Schistosoma mansoni
cluster # 8873 cluster # 8873       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8873#0 length = 1015 sequences # 6  
consensus_8873#1 length = 202 sequences # 1  

consensusID : consensus_8873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1015
fasta sequence
                              [CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG-CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT-CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA]

[+] EMBL CD083490             [CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTCAATATTAATTGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AI975562             [                                                                                                                                                                                                                                                                                                            TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAGATGATCAACAGTTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTTCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTTACCACCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAGTACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGC                                                                                                                                                                                                              ]
[+] EMBL AI975474             [                                                                                                                                                                                                                                                                                                            TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTT                                                                                                                                                                                                                                                                           ]
[+] EMBL BF936333             [                                                                                                                                                                                                                                                                                                            TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAA                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BF936705             [                                                                                                                                                                                                                                                                                                                                                    GTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCCTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA]
[+] EMBL CD181714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAA TACACGACAAGCATTACCAGCTTTACCNATATCCCAT ACATGTGGNATATTANTTTt                                                                                                          ]


>consensus_8873#0 CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTA CGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTA TATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTG ACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATT GCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATA TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGA TCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCTCGGAATGAAGCGTTAAA TATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAG TAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCG AACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAA TAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACC CAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACT TGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGA TGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTAT AGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATATCCATAACATGTGGTAT ATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGA ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA



consensusID : consensus_8873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence
                              [GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA]

[+] EMBL CD092594             [GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA]


>consensus_8873#1 GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTT CTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTG TCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACC GTTGATTTAAAATACTCATTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8873#0      CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTA 60
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      CGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTA 120
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTG 180
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      ACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATT 240
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      GCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATA 300
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGA 360
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCTCGGAATGAAGCGTTAAA 420
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAG 480
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCG 540
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      AACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAA 600
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACC 660
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      CAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACT 720
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGA 780
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      TGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTAT 840
consensus_8873#1      ------------------------------------------------------------
                                                                                  

consensus_8873#0      AGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATATCCATAACATGTGGTAT 900
consensus_8873#1      ---------------------------------------GGCCGCCATGGCG-GCCGTTT 20
                                                                  ****  *  *  ** *

consensus_8873#0      ATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGA 960
consensus_8873#1      TTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGA 80
                       * ***  *** * ***       ****************************** *****

consensus_8873#0      ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA----- 1015
consensus_8873#1      ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATG 140
                      **************************************** *********** **     

consensus_8873#0      ------------------------------------------------------------
consensus_8873#1      ATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATT 200
                                                                                  

consensus_8873#0      --
consensus_8873#1      AA 202
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)