These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGC-ATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTANATACGAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTTGACGTGAACTTCGTGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCACAACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAAAATCATGTAGAATGATTAGTCTTTTAATCATCACACGTTCATCACAAGCTTTAGACCCGAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGCCACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA] [+] EMBL CD199252 [TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGC ATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTANATACGAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCAC ] [+] EMBL CD078884 [ GCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTTGACGTGAACTTCGTGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCACAACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAAAATCATGTAGAATGATTAGTCTTTTAATCATCACACGTTCATCACAAGCTTTAGACCCGAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGCCACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA] consensusID : consensus_8880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGATATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAATTTAACAAAAACTGTATTATTAGATGAAAATTTGGATGTTCACTTACATTCAAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTTGATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAAGCCAGTCAACTCTGTTATGGGTAATCAACATG] [+] EMBL CD168304 [AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGATATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAATTTAACAAAAACTGTATTATTAGATGAAAATTTGGATGTTCACTTACATTCAAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTTGATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAAGCCAGTCAACTCTGTTATGGGTAATCAACATG] [+] EMBL CD199312 [ CAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACGAACTCGAATCTTCTCTCGAATTCTATCGACGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCCAGGGATATATCAT ] consensusID : consensus_8880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 366 fasta sequence [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACTATTA] [+] EMBL CD152605 [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAGCAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACTATTA] [+] EMBL CD152759 [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCGGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACT ] [+] EMBL CD152585 [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATAGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8880#0 TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCA 60 consensus_8880#1 ------------AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCA 48 consensus_8880#2 ------------------------------------------------------------ consensus_8880#0 TATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATG-TTGAAATTGCTGT 119 consensus_8880#1 TATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATG-TTGAAATTGCTGT 107 consensus_8880#2 -TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGA 59 *** **** ** * * * * **** * * ** * * **** * * consensus_8880#0 TGAAGCA-TTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGT 178 consensus_8880#1 TGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGT 167 consensus_8880#2 TGGTGTCGTTGTCTCTGTACAATCTGGAG--ACGAATCAGGT-AAAACATTTGAAT--GT 114 ** * *** * * * ** * * * * *** * * * ** *** * ** consensus_8880#0 TAAAGAA-ACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTC 237 consensus_8880#1 TAAAGAA-ACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTC 226 consensus_8880#2 AAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTA--CAT 172 * *** * ** ** * * *** ** *** ** ** ** * * * consensus_8880#0 TTGGTGTTTTCTCATTCAATAACG-ATCTANATACGAACTCGAATCT-TCTTTCGAATTC 295 consensus_8880#1 TTGGTGTTTTCTCATTCAATAACG-ATCTAAATACTAACTCGAATCT-TCTTTCGAATTC 284 consensus_8880#2 TTGGT-TTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTC 231 ***** *** * * * ** *** *** ** ** * ** * ** ** consensus_8880#0 TATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTT 355 consensus_8880#1 TATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGA 344 consensus_8880#2 AATGTGTAGTACTAG--TTATTAA-ATCCTTTATTATGTATAGCTGGGGAACTATA---T 285 ** * * *** * * * * * * *** * * * * * * * consensus_8880#0 GACGTGAACTTCG--TGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCAC 413 consensus_8880#1 TATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAA 404 consensus_8880#2 TACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACA 345 * * * * * * * * ** consensus_8880#0 AACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAA 473 consensus_8880#1 TTTAACAAAAACTGTATTATTA--GATGAAAATTTGGATGTTCACTTACATTC------- 455 consensus_8880#2 GCTTATGGTAATTG-ACTATTA-------------------------------------- 366 * ** consensus_8880#0 AATCATGTAGAATGATTAGTCTTTTAATCAT-CACACGTT-CATCACAAGCTTTAGACCC 531 consensus_8880#1 AAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTT 515 consensus_8880#2 ------------------------------------------------------------ consensus_8880#0 GAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGC 591 consensus_8880#1 GATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAA---GCCAGTCAA 572 consensus_8880#2 ------------------------------------------------------------ consensus_8880#0 CACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA 643 consensus_8880#1 CTCTGTTATGGGTAATCAACATG----------------------------- 595 consensus_8880#2 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||