These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 772 fasta sequence [TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATGGCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAAGATGCTTGCGAGTGCTTTTCCGAAATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAGCGATGAA] [+] EMBL CD184654 [TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATGGCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAAGATGCTTGCGAGTGCTTTTCCGAAATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCCGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATAT ] [+] EMBL BF936574 [ ACAGTGGACCGCGAGGCTTTCCTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAGCGATGAA] [-] EMBL CD179603 [ TTCGTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTATCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCT ] [-] EMBL CD113924 [ CGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGGAAgggta ] consensusID : consensus_8894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACGACGATGAAGACGATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTACCCCCCATTATGCTATTTTTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGTTTTTTATG] [+] EMBL AI975334 [TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACGACGATGAAGACGATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTACCCCCCATTATGCTATTTTTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGTTTTT ] [+] EMBL CD083574 [ cacgaggGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTA CCCCCATTATGCTATTTCTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGATTTCTATG] consensusID : consensus_8894#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGT] [+] EMBL CD152958 [CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8894#0 TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATG 60 consensus_8894#2 ------------------------------------------------------------ consensus_8894#1 ------------------------------------------------------------ consensus_8894#0 GCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAA-GATGCTTGCGAGTGCTTTTCCG 119 consensus_8894#2 ------------------------------------------------------------ consensus_8894#1 ---------TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACG 51 consensus_8894#0 A-AATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCTGGCAAAT 178 consensus_8894#2 ------------------------------------------------------------ consensus_8894#1 ACGATGAAGACG-ATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAG 110 consensus_8894#0 GCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAA 238 consensus_8894#2 ------------------------------------------------------------ consensus_8894#1 TCTGAATGTGAT--ATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAAT---TGG 165 consensus_8894#0 GAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGT 298 consensus_8894#2 ------------------------------------------------------------ consensus_8894#1 AAAGAACTGATTATGCATGGTAT--AGTCAGTTGA--TCAATCATCTTAGTGAAGTACAA 221 consensus_8894#0 CAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACAC-GTCC 357 consensus_8894#2 CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACAC-GTCC 59 consensus_8894#1 CAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCT 281 *** *** * * * ** ** ** * ** * * * * *** consensus_8894#0 GCTTGTTTCAAGTGAACTTAGA---ACACTCTGTATTCAGGTGGTAATTGCTGGATTGCT 414 consensus_8894#2 GCTTGTTTCAAGTGAACTTAGA---ACACTCTGTATTCAGGTGGTAATTGCTGGATTGCT 116 consensus_8894#1 AAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGAT 341 * * * * ** ***** * * * * * * * * *** * consensus_8894#0 TT--ACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAG 472 consensus_8894#2 TT--ACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAG 174 consensus_8894#1 TTTGGTTCACCCAATGG-ACAACTTAAATGACCATCG-GTGTGTGTG-TGTGTGTGTGTT 398 ** ***** * * * * * **** **** * * ** ** * * consensus_8894#0 GTTAACATT-TTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGG 531 consensus_8894#2 GTTAACATT-TTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGG 233 consensus_8894#1 ATAAACTCTGTTGTATGGTGGAATTAAGTAATA-ATTTATGATGC---TTTTTTTCTCTG 454 * *** * **** * **** ** *** * ***** * *** ** * consensus_8894#0 ATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGA 591 consensus_8894#2 ATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGA 293 consensus_8894#1 --TATAGGAT----ACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTT-A 507 ** * *** * ** ** ** * * * * * * ** * * * * * consensus_8894#0 CAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATAC-CATCAC-TTCTACT- 648 consensus_8894#2 CAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCG 353 consensus_8894#1 CAATTTACTTAACTCCAATATAATA---AATGAGCACTACCCCC-CATTA--TGCTATT- 560 *** * * * * * * *** * * *** * * * * * *** consensus_8894#0 TCTATTTTCTGGA---CTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGA 705 consensus_8894#2 TGTAATGACTGAA---TTGGAAAGAACTGATTATGCATGG---TATAGTCAGTTGATCAA 407 consensus_8894#1 TTTATTTCGTAAATATCTGGTAATTATG-ATTTTATTCTTGCTTCAGTTTTTTATG---- 615 * ** * * * ** ** * * * consensus_8894#0 TGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAG 765 consensus_8894#2 TCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATG 467 consensus_8894#1 ------------------------------------------------------------ consensus_8894#0 CGATGAA----------------------------------------------------- 772 consensus_8894#2 TATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAA 527 consensus_8894#1 ------------------------------------------------------------ consensus_8894#0 ------------------------------------------------------------ consensus_8894#2 TATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTG 587 consensus_8894#1 ------------------------------------------------------------ consensus_8894#0 ----------- consensus_8894#2 TGTGTGTGTGT 598 consensus_8894#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||