These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 945 fasta sequence [TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATCAGTGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACAGAGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACTGAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCACAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAGCGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAATCCAG] [+] EMBL AA559830 [TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATCAGTGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCA ] [+] EMBL CD080547 [ TGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACGAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACAGAGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACTGAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCACAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAGCGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAATCCAG] consensusID : consensus_8939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 748 fasta sequence [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA-GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTTTCCAGTTGCCTTTCGTATTGTTAAATTAGACCATATCAGGAGGCCAGTATG] [+] EMBL CD088966 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTTTCCAGTTGCCTTTCGTATTGTTAAATTAGACCATATCAGGAGGCCAGTATG] [+] EMBL CD088896 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTA ] [+] EMBL CD088905 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGACTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATTATTATTCCTAATT ] [+] EMBL CD088887 [ GCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTACCCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCC ] consensusID : consensus_8939#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [GTGACAGACACCAAATCTTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTNTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACGAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATGGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAGAGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGAAACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAATATAAACTG] [-] EMBL CD149084 [GTGACAGACACCAAATCTTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTNTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACGAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATGGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACA ] [-] EMBL BG932603 [ AGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAGAGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGAAACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAATATAAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8939#0 TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATC 60 consensus_8939#2 ------------------------------------------------------------ consensus_8939#1 -----------------------TGTGGTGTAGTAGGTTTCT----TCACGTTCGATAAT 33 consensus_8939#0 AGTGCACCAAAGTGTGTAGTGG--TTGATAAACCCTCCGTATCTGTCTCATCAATAAAGC 118 consensus_8939#2 ------------------------GTGACAGACA--CCAAATCT-TCCCCGCAGTAACGC 33 consensus_8939#1 AGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAA 93 * * * * * ** * consensus_8939#0 TCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCT 178 consensus_8939#2 GTTGATAATAAACTTTCCAAGATTATTA----AAATCTA-TGATTACG-GTAG-CGCCAG 86 consensus_8939#1 CAGAAATATTTACCATTTGGCAAAATCAT-TTATATCACCAATCGGTCTGCTG--AAAAG 150 * * * * * * ** * * consensus_8939#0 CTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAA 238 consensus_8939#2 TTGGAGTTT-----TGAAATAATTATTCCTAATT-CATAACTGTAGTTT----------A 130 consensus_8939#1 TTGAATATTA-----AGTTGTTTTCCCCCAAATTCCAT--TTAAAACCCC--------GG 195 ** * ** ** ** ** * * * * consensus_8939#0 ACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTT 298 consensus_8939#2 CCTTTAGATTNTT----------CTGTCCTTCAGTTTTT-GCCGTAATGCGTAGTCACTT 179 consensus_8939#1 GTCTTAGGCTGTAGA-----CTAAAATATCTTGTCTGAT--TTGTAGCGCAAAGT-ACTT 247 * * * * * * * * *** ** *** **** consensus_8939#0 CACTGAACAAGAAGCACTTCTGTAGTGACAAGCA-CAACGATTATTATTAATTATGGATG 357 consensus_8939#2 CACTGAACAAGAAGCACTTCTGTAGTGACGAGCA-CAACGATTATTATTAATTATGGATG 238 consensus_8939#1 TACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTC 307 ** ** * ** ** * * * * * * ** * ** ** * * consensus_8939#0 AAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTG 417 consensus_8939#2 AAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTG 298 consensus_8939#1 AAATGGAAGTAGGATT--ACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCA 365 *** ** ** ** ** ** * ** ** * ** ** * consensus_8939#0 AATC----CGTAACGGTTGAGAAGG-ATTTGAAGCCTAATGGTGTTTATCAACCACCACA 472 consensus_8939#2 AATC----CGTAACGGTTGAGAAGG-ATTTGAAGCCTAATGGTGTTTATCAACCACCACA 353 consensus_8939#1 TATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACA-TTATGTGA 424 *** * * ** *** *** * * ** * ** ** * * consensus_8939#0 CTTGACTCCAGTCTTCTTTGAGGAAGGCA---AGAAAAAACCGTCAA----TAGAAAGGG 525 consensus_8939#2 CTTGACTCCAGTCTTCTTTGAGGAAGGCA---AGAAAAAACCGTCAA----TGGAAAGGG 406 consensus_8939#1 CAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAAT 484 * * * *** * ** ** ** * ** **** ** * * ** consensus_8939#0 CCAAGCTGAGAGCGGCTCGGTTT--ATTTTAGAAGATACTGATTTAAATGAATCAGAAGA 583 consensus_8939#2 CCAAGCTGAGAGCGGCTCGGTTT--ATTTTAGAAGATACTGATTTAAATGAATCAGAAGA 464 consensus_8939#1 CTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTA 544 * * * * * * ** * ** * *** *** * * * *** ** * * consensus_8939#0 -TTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAA- 641 consensus_8939#2 -TTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAA 523 consensus_8939#1 GTTTACCTTTAGATTTTTCTGTCCT-TCAGTTTTTGCCGTAA--TGCGTAGTCACTTCAC 601 *** *** *** *** * * * * ** * * ** * * * * * consensus_8939#0 TGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACA-G 700 consensus_8939#2 TGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAG 583 consensus_8939#1 TGAAC-AGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAAC 660 **** * ** ** * * ** * ** * * ** ** * consensus_8939#0 AGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACT 760 consensus_8939#2 AGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGA 643 consensus_8939#1 CGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTT-TCCAGTTGCCTTTCGTATTGTT 719 ** * *** * * * * * ** *** * ** consensus_8939#0 GAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCA 820 consensus_8939#2 AACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAA-TATAAACTG------ 696 consensus_8939#1 AAATTAGACCATATCAGGAGGCCAGTATG------------------------------- 748 * * * * * ** consensus_8939#0 CAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAG 880 consensus_8939#2 ------------------------------------------------------------ consensus_8939#1 ------------------------------------------------------------ consensus_8939#0 CGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAA 940 consensus_8939#2 ------------------------------------------------------------ consensus_8939#1 ------------------------------------------------------------ consensus_8939#0 TCCAG 945 consensus_8939#2 ----- consensus_8939#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||